View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_20 (Length: 239)
Name: NF13039_low_20
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 40492974 - 40492766
Alignment:
| Q |
9 |
tgatgtaccgagaatattgtgcatatcctaggtggtgtaatggtatcctggaaccgcacagaaacaaaattcacacccctcttgtgttgggggatcaagt |
108 |
Q |
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| T |
40492974 |
tgatgtaccgagaatattgtgcatatcctaggtggtgtaatggtatcttggaaccgcacagaaacaaaatccacactcatcttgtgttggggaatcgagt |
40492875 |
T |
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| Q |
109 |
tgaataaataaaagaggattacaacgtgtaaatctgctacaactgaaagtaagaatttagtgttaatttccatatgattttaaggtggtggtagtgttgc |
208 |
Q |
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| T |
40492874 |
tgaataaataaaataaaattactatttgtaaatctgctgtaactgaaagtaagaatttagtgttaatttctgtatgattttaaggtgatggtagtggtgc |
40492775 |
T |
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| Q |
209 |
atatagttt |
217 |
Q |
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| T |
40492774 |
atatagttt |
40492766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 22112351 - 22112448
Alignment:
| Q |
108 |
ttgaataaataaaagaggattacaacgtgtaaatctgctacaactgaaagtaagaatttagtgttaatttccatatgattttaaggtggtggtagtgt |
205 |
Q |
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| T |
22112351 |
ttgaataaataaaagaagactgtagcttgtaaagctgctgcaattgaaagtaaaaatttagtattagtttccatctgattttagggtggtggtggtgt |
22112448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 40494100 - 40494003
Alignment:
| Q |
108 |
ttgaataaataaaagaggattacaacgtgtaaatctgctacaactgaaagtaagaatttagtgttaatttccatatgattttaaggtggtggtagtgt |
205 |
Q |
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| T |
40494100 |
ttgaataaataaaagaagactgtagcttgtaaagctgctgcaattgaaagtaaaaatttagtattagtttccatctgattttagggtggtggtggtgt |
40494003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 40498697 - 40498649
Alignment:
| Q |
38 |
aggtggtgtaatggtatcctggaaccgcacagaaacaaaattcacaccc |
86 |
Q |
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| T |
40498697 |
aggtagtgtaatggtatcctgaaaccgcacaaaaacaaaattcacaccc |
40498649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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