View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_3 (Length: 575)
Name: NF13039_low_3
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 13 - 560
Target Start/End: Complemental strand, 53839304 - 53838762
Alignment:
| Q |
13 |
aatatattggttgcatatttcagaaactttatcaacaggactcaaatacaacttcaatatccacactcatgtttaaagtgtgtgtaattcccacatgcct |
112 |
Q |
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| T |
53839304 |
aatatataggttgcatatttcagaaactttaacaacatgactcaaatacaacttcaatatccacactcatgtttaaagtgtgtgtaattcccacatgcct |
53839205 |
T |
|
| Q |
113 |
taagaaaattgttttgataatgttgaacggactcaaattgtccatactagatgtataggtggttattgatatcgtgaaaataatgtcaaaattgtcaatc |
212 |
Q |
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| T |
53839204 |
taagaaaattgttttgataatgttgaacggactcaaattgtccata-----tgtataggtggttattgatatcgtgaaaataatgtcaaaattgtcaatc |
53839110 |
T |
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| Q |
213 |
cctaattttcttagcaaattgtatttgtatcgcacattgtaaatgcatctgagttgtgcaaggtatgtttaggcttaatttcaaacacaatcaaacatga |
312 |
Q |
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| T |
53839109 |
cctaattttcttagcaaattgtatttgtatcgcacattgtaaaagcttctgagtagtgcaaggtatgtttaggcttaatttcaaacacaatcaaacatga |
53839010 |
T |
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| Q |
313 |
gaaaatcgtgattatatcacttaatttcaaacacaatcaatcaatcaattgtaaaggtacagtccatatatcaatgcaacatatgacaaaattctatgtt |
412 |
Q |
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| T |
53839009 |
gaaaatcgtgattatatcacttaatttcaaacacaatcaatcaatcaattgtaaaggtacagtccatatatcaatgcaacatatgacaaaattctatgtt |
53838910 |
T |
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| Q |
413 |
gccaacgtgcccaatataggattggttcatacattgacatatgtaaatcagagaagcagttttaatttgtctaataatacaacaatctataggctatcat |
512 |
Q |
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| T |
53838909 |
gccaacgtgcccagtataggattggttcatacattgacatatgtaaatcagggaagcagttttaatttgtctaataatacaacaatctataggctatcat |
53838810 |
T |
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| Q |
513 |
tatcaaattgagtcaagttgattcacaaaactcaaatatgaaattaat |
560 |
Q |
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| T |
53838809 |
tatcaaattgagtcaagttgattcacaaaactcaaatatgaaattaat |
53838762 |
T |
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