View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_5 (Length: 511)
Name: NF13039_low_5
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 14597461 - 14597098
Alignment:
| Q |
19 |
aaaagatcctaaacatgaatgtacggatgaagtctgtgaaactacaccggccttgaatgccagtgagtttgatcaagatttagattcaaacttgttgccc |
118 |
Q |
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| T |
14597461 |
aaaagatcctaaacatgaatgtacggatgaagtctgtgaaactacaccggccttgaatgccagtgagtttgatcaagatttagattcaaacttgttgccc |
14597362 |
T |
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| Q |
119 |
aagcgattcggtaattcatccatgttggctgatagcataccagtcgctgagttccaaggtcgccctcttgcagatcatcctaacgtcaggtatggacgtc |
218 |
Q |
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| T |
14597361 |
aagcgatttggtaattcatccatgttggctgatagcataccagtcgctgagttccaaggtcgccctcttgcagatcatcctaacgtcaggtatggacgtc |
14597262 |
T |
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| Q |
219 |
caggaggtgttcttaggaaacctcgtgaaccactcgatgctcctacagtagcagaatctgtgtctgtcatttcttgttggtatgtatactttgtcaaaca |
318 |
Q |
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| T |
14597261 |
caggaggtgttcttaggaaacctcgtgaaccactcgatgctcctacagtagcagaatctgtgtctgtcatttcttgttggtatgtatactttgtcaaaca |
14597162 |
T |
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| Q |
319 |
caaacatataagtcataaaaaatatttttgtacttatatacaatattatatatgaaaagacaac |
382 |
Q |
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| T |
14597161 |
caaacatataagtcataaaaaatatttttgtacttatatacaatattatatatgaaaagacaac |
14597098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 14597047 - 14596985
Alignment:
| Q |
433 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtga |
495 |
Q |
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| T |
14597047 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtga |
14596985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 14611523 - 14611585
Alignment:
| Q |
433 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtga |
495 |
Q |
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| T |
14611523 |
catgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatggatcagtga |
14611585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 490
Target Start/End: Complemental strand, 12192859 - 12192808
Alignment:
| Q |
439 |
ggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtc |
490 |
Q |
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| T |
12192859 |
ggtatgaagataagaccgaatggggagatagagttggatggatttacgggtc |
12192808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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