View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_6 (Length: 477)
Name: NF13039_low_6
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 463
Target Start/End: Original strand, 52997712 - 52998165
Alignment:
| Q |
15 |
cacagagaacttaaatggccttatttgttttatttggtaaaaatggataacataacatatgcttcatagaaacataactgtatcaaactttgtgtatggg |
114 |
Q |
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| T |
52997712 |
cacagagaacttaaatggccttatttgttttatttggtaaaaatggataacataacatatgcttcatagaaacataactgtaacaaactttgtgtatggg |
52997811 |
T |
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| Q |
115 |
ctctcattgtttcttccttcttgggttactgcagcaggatatatactgtcgcaggcattgagtnnnnnnngatggaccaccttagattttctcaagataa |
214 |
Q |
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| T |
52997812 |
ctctcattgtttcttccttcttgggttactgcagcaggatgtatactgtcgcaggcattgagtcccccccgatggaccaccttagattttctcaagataa |
52997911 |
T |
|
| Q |
215 |
aatttaatcaaacttacttatatgnnnnnnnnnnnnnnaattatattcatcttttgggcagtttcaaggtgaaatgcgcctcaaatacaagtaaagataa |
314 |
Q |
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| T |
52997912 |
aatttaatgaaacttacttatatgtttttttcctttttaattatattcatcttttgggctgtttcaaggtgaaatgcgcctcaaatacaagtaaagataa |
52998011 |
T |
|
| Q |
315 |
aagtttagta-----nnnnnnnnnctttctttctgacaagagataaaagtttaatatttctactcatataaatttttcttatcggatccgtctgcattac |
409 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52998012 |
aagtttagtattttttttttttttttttctttctgacaagagataaaagtttaatatttctactcatataaatttttcttatcggatccgtctacattac |
52998111 |
T |
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| Q |
410 |
aatcaaacggatctttaacttttaggagaaaactattgtcatattgaagtatat |
463 |
Q |
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| T |
52998112 |
aatcaaacggatctttaacttttaggagaaaactattgtcatattgaagtatat |
52998165 |
T |
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