View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_7 (Length: 457)
Name: NF13039_low_7
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 54613980 - 54614393
Alignment:
| Q |
14 |
gttacaagataatggaagtgaaaaattcatcgaccgtaacgcggattgtttctctgttatcttagatctgctacgaacaggtgaactctacatcccacaa |
113 |
Q |
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| T |
54613980 |
gttacaagataatggaagtgaaaaattcatcgaccgtaacgcggattgtttctctgttatcttagatctgctacgaacaggtgaactctacatcccacaa |
54614079 |
T |
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| Q |
114 |
aatgttcctgaaaagcttctttacagagaagctctgttttatggtgttctagatcatgttcgttctgcaaagtggggtcaatttgatggtaataggttaa |
213 |
Q |
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| T |
54614080 |
aatgttcctgaaaagcttctttacagagaagctctgttttatggtgttctagatcatgttcgttctgcaaagtggggtcaatttgatggtaataggttaa |
54614179 |
T |
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| Q |
214 |
gattgtcttgttctgttcaaggacaagcaccgggtgatggaacagcaattcgagccggtccagatggtggttgttgtgttgctcatggttgcatggttca |
313 |
Q |
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| T |
54614180 |
gattgtcttgttctgttcaaggacaagcaccgggtgatggaacagcaattcgagccggtccagatggtggctgttgtgttgctcatggttgcatggttca |
54614279 |
T |
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| Q |
314 |
tgtttatgattggatgttagaagaacattgtcctcttaatcttgattatcaaagagtcaacgatgttggttgggttgaccctaacaatattgttataggt |
413 |
Q |
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| T |
54614280 |
tgtttatgattggatgttagaagaacattgtcctcttaatcttgattatcaaagagtcaacgatgttggttgggttgaccctaacaatattgttataggt |
54614379 |
T |
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| Q |
414 |
gtaagtgaaagact |
427 |
Q |
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| T |
54614380 |
gtaagtgaaagact |
54614393 |
T |
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