View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13039_low_9 (Length: 390)
Name: NF13039_low_9
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 51904931 - 51905100
Alignment:
| Q |
7 |
tcgaagaatatcggtacataaaatgatagaagacgtgccttcttaagtgcaaggccatctttctcaggaacaattccatggattgcaaccaaaacttcta |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51904931 |
tcgaaaaatatcggtacataaaatgatagaagacgtgccttcttaagtgctaggccatctttctcaggaacaattccatggattgcaaccaaaacttcta |
51905030 |
T |
|
| Q |
107 |
caggtgttaaagctggacctgtatgagctgaaccctgccatgaatagcttagaatacttagcacccattt |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51905031 |
caggtgttaaagctggacctgtatgagctgaaccctgccatgaatagcttagaatacttagcacccattt |
51905100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 216 - 369
Target Start/End: Original strand, 51905135 - 51905287
Alignment:
| Q |
216 |
ttgggataaagaatatatgaacagttccaatgaaaagctttaaatactccgttaaaatttcactctgttcaggctaacttaaatataggtcgcattgatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51905135 |
ttgggataaagaatatatgaacagttccaatgaaaagctttaaatactccgttaaaatttcactctgttcaggctaacttaaatataggtcgcattgatt |
51905234 |
T |
|
| Q |
316 |
gtacccaaaaaggaaaacttatttatggaagtggggtgagaattaagagtgcta |
369 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51905235 |
gtacccaaaaagg-aaacttatttatggaagtggggtgagaattaagagtgcta |
51905287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University