View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1303_high_4 (Length: 371)

Name: NF1303_high_4
Description: NF1303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1303_high_4
NF1303_high_4
[»] chr7 (4 HSPs)
chr7 (16-139)||(43160239-43160362)
chr7 (205-271)||(43160107-43160173)
chr7 (212-271)||(13947223-13947282)
chr7 (70-139)||(13947356-13947425)
[»] chr5 (2 HSPs)
chr5 (70-139)||(9262908-9262977)
chr5 (212-271)||(9263051-9263110)
[»] chr6 (6 HSPs)
chr6 (70-139)||(2313784-2313853)
chr6 (76-139)||(32445173-32445236)
chr6 (70-139)||(11179043-11179112)
chr6 (212-271)||(2313927-2313986)
chr6 (212-271)||(32445040-32445099)
chr6 (212-272)||(11178918-11178979)
[»] chr8 (6 HSPs)
chr8 (212-271)||(1662025-1662084)
chr8 (212-271)||(11143269-11143328)
chr8 (70-139)||(1604536-1604605)
chr8 (70-139)||(1661882-1661951)
chr8 (212-263)||(1604679-1604730)
chr8 (70-139)||(11143402-11143471)
[»] chr3 (4 HSPs)
chr3 (212-271)||(4865695-4865754)
chr3 (212-271)||(55040946-55041005)
chr3 (70-139)||(4865828-4865897)
chr3 (70-139)||(55040803-55040872)
[»] chr1 (6 HSPs)
chr1 (212-271)||(29394882-29394941)
chr1 (212-271)||(30410284-30410343)
chr1 (70-139)||(29394739-29394808)
chr1 (70-139)||(30410141-30410210)
chr1 (70-139)||(35162663-35162732)
chr1 (212-263)||(35162538-35162589)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 43160362 - 43160239
Alignment:
Q  16 agcataggcaacaacggcaccatctggacaaaccagcggcatatgcaatccccaaaaatccttccgtgaccgtgcagtttcactaagaactccagcttct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43160362 agcataggcaacaacggcaccatctggacaaaccagcggcatatgcaatccccaaaaatccttccgtgaccgtgcagtttcactaagaactccagcttct 43160263  T
Q  116 tcaagctcctttcctatcaaatcg 139  Q
    ||||||||||||||||||||||||    
T  43160262 tcaagctcctttcctatcaaatcg 43160239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 43160173 - 43160107
Alignment:
Q  205 cgcaacaaaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43160173 cgcaacgaaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 43160107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 13947282 - 13947223
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  13947282 aaactgaaaacgcataccgagggatcgaaggtcttgaaaattttgttgcatagaagcatt 13947223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 13947425 - 13947356
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| ||| |||| | |||||| ||||||||| |||||||||||||||||||||||||||||    
T  13947425 aaaaaccttccgcgacagtgccgattcactgagaactccaccttcttcaagctcctttcctatcaaatcg 13947356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 9262908 - 9262977
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9262908 aaaaaccttccgcgaccgtgccgattcactaagaactccagcttcttcaagctcctttcctatcaaatcg 9262977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 9263051 - 9263110
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    ||||||||||||||||| |||||||||||| || |  ||||| | |||||||||||||||    
T  9263051 aaactgaaaacgcatacagagggatcgaagctcatataaatgttattgcatagaagcatt 9263110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 2313784 - 2313853
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||||    
T  2313784 aaaaaccttccgcgaccgtgccgattcactaagaactccaacttcttcaagctcctttcctatcaaatcg 2313853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 32445236 - 32445173
Alignment:
Q  76 cttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||||| |||||||| | |||||||||||||||||||||||||||| |||||||||||||||||    
T  32445236 cttccgcgaccgtgccgattcactaagaactccagcttcttcaagcacctttcctatcaaatcg 32445173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 11179112 - 11179043
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| ||| |||| | ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  11179112 aaaaaccttccgcgactgtgccgattcactaagaactcccgcttcttcaagctcccttcctatcaaatcg 11179043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 2313927 - 2313986
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    ||||||||||||||||| |||||||||||| || |  ||||| | |||||||||||||||    
T  2313927 aaactgaaaacgcatacagagggatcgaagctcatataaatgttattgcatagaagcatt 2313986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 32445099 - 32445040
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    |||||||||| ||||||||||||||||||| || |  ||||  |||||||||||||||||    
T  32445099 aaactgaaaatgcataccgagggatcgaagctcatataaattttgttgcatagaagcatt 32445040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 11178979 - 11178918
Alignment:
Q  212 aaactgaaaacgcatacc-gagggatcgaaggtctttaaaatgctgttgcatagaagcattt 272  Q
    |||||||||||||||||| |||||||||||| || |  ||||  ||||||||||||||||||    
T  11178979 aaactgaaaacgcatacccgagggatcgaagctcatataaattttgttgcatagaagcattt 11178918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 1662025 - 1662084
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  1662025 aaactgaaaacgcataccgagggatcgaaggtcttgaaaattttgttgcatagaagcatt 1662084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 11143328 - 11143269
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  11143328 aaactgaaaacgcataccgagggatcgaaggtcttgaaaattttgttgcatagaagcatt 11143269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 1604536 - 1604605
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| |||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||    
T  1604536 aaaaaccttccgcgaccgtgccgattcacttagaactccagcttcttcaaactcctttcctatcaaatcg 1604605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 1661882 - 1661951
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| ||| |||| | |||||| ||||||||| |||||||||||||||||||||||||||||    
T  1661882 aaaaaccttccgcgacagtgccgattcactgagaactccaccttcttcaagctcctttcctatcaaatcg 1661951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 1604679 - 1604730
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcata 263  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||    
T  1604679 aaactgaaaacgcataccgagggatcgaaggtcttgaaaattttgttgcata 1604730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 11143471 - 11143402
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| ||| |||| | |||||| ||||||||| ||| |||||||||||||||||||||||||    
T  11143471 aaaaaccttccgcgacagtgccgattcactgagaactccaccttattcaagctcctttcctatcaaatcg 11143402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 4865754 - 4865695
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  4865754 aaactgaaaacgcataccgagggatcgaaggtcttgaaaattttgttgcatagaagcatt 4865695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 55040946 - 55041005
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    ||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||||    
T  55040946 aaactgaaaacgcataccgagggatcgaaggtcttgaaaattttattgcatagaagcatt 55041005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 4865897 - 4865828
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| ||| |||| | |||||| ||||||||| |||||||||||||||||||||||||||||    
T  4865897 aaaaaccttccgcgacagtgccgattcactgagaactccaccttcttcaagctcctttcctatcaaatcg 4865828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 55040803 - 55040872
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| ||| |||| | |||||| ||||||||| |||||||||||||||||||||||||||||    
T  55040803 aaaaaccttccgcgacagtgccgattcactgagaactccaccttcttcaagctcctttcctatcaaatcg 55040872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 29394882 - 29394941
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  29394882 aaactgaaaacgcataccgagggatcgaaggtcttgaaaattttgttgcatagaagcatt 29394941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 30410284 - 30410343
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcatagaagcatt 271  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  30410284 aaactgaaaacgcataccgagggatcgaaggtcttgaaaattttgttgcatagaagcatt 30410343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 29394739 - 29394808
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| ||| |||| | |||||| ||||||||| |||||||||||||||||||||||||||||    
T  29394739 aaaaaccttccgcgacagtgccgattcactgagaactccaccttcttcaagctcctttcctatcaaatcg 29394808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 30410141 - 30410210
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| ||| |||| | |||||| ||||||||| |||||||||||||||||||||||||||||    
T  30410141 aaaaaccttccgcgacagtgccgattcactgagaactccaccttcttcaagctcctttcctatcaaatcg 30410210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 35162732 - 35162663
Alignment:
Q  70 aaaatccttccgtgaccgtgcagtttcactaagaactccagcttcttcaagctcctttcctatcaaatcg 139  Q
    |||| ||||||| ||| |||| | |||||| ||||||||| |||||||||||||||||||||||||||||    
T  35162732 aaaaaccttccgcgacagtgccgattcactgagaactccaccttcttcaagctcctttcctatcaaatcg 35162663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 35162589 - 35162538
Alignment:
Q  212 aaactgaaaacgcataccgagggatcgaaggtctttaaaatgctgttgcata 263  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||    
T  35162589 aaactgaaaacgcataccgagggatcgaaggtcttgaaaattttgttgcata 35162538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University