View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1303_high_7 (Length: 251)

Name: NF1303_high_7
Description: NF1303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1303_high_7
NF1303_high_7
[»] chr3 (5 HSPs)
chr3 (16-134)||(24622574-24622692)
chr3 (151-247)||(37273188-37273284)
chr3 (157-225)||(22667479-22667547)
chr3 (157-225)||(22724118-22724186)
chr3 (157-225)||(44014724-44014792)
[»] chr8 (4 HSPs)
chr8 (162-219)||(1889066-1889123)
chr8 (159-225)||(24326107-24326173)
chr8 (157-226)||(7714317-7714386)
chr8 (157-225)||(16162836-16162904)
[»] chr5 (3 HSPs)
chr5 (145-225)||(37954763-37954843)
chr5 (152-245)||(11457154-11457247)
chr5 (162-218)||(14980592-14980648)
[»] chr4 (6 HSPs)
chr4 (157-218)||(19429396-19429457)
chr4 (157-247)||(10365829-10365919)
chr4 (164-226)||(18628486-18628548)
chr4 (157-194)||(1075565-1075602)
chr4 (157-226)||(25717668-25717737)
chr4 (157-194)||(29126189-29126226)
[»] chr7 (5 HSPs)
chr7 (157-225)||(10079265-10079333)
chr7 (157-226)||(31341210-31341279)
chr7 (151-219)||(529444-529512)
chr7 (157-225)||(1418495-1418563)
chr7 (157-225)||(3610666-3610734)
[»] chr6 (2 HSPs)
chr6 (151-226)||(2455885-2455960)
chr6 (185-245)||(32917253-32917313)
[»] chr1 (1 HSPs)
chr1 (157-226)||(4549467-4549536)
[»] chr2 (1 HSPs)
chr2 (157-245)||(28803456-28803544)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 24622692 - 24622574
Alignment:
Q  16 atgaaattataaaatcaacaacaaaactatttgagatcaagatatttcaaataaagacatcagttactactagtagcaatcaaaataaaatttccttcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24622692 atgaaattataaaatcaacaacaaaactatttgagatcaagatatttcaaataaagacatcagttactactagtagcaatcaaaataaaatttccttcat 24622593  T
Q  116 ggtcaagccaccacaactt 134  Q
    |||||||||||||||||||    
T  24622592 ggtcaagccaccacaactt 24622574  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 37273284 - 37273188
Alignment:
Q  151 gattgtattggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaaactatagcatgtccataagtt 247  Q
    |||||| ||||||||||||| ||||| ||   |||||| ||||   ||| |||||||||| |||||||||||||||  |||  ||||||||||||||    
T  37273284 gattgtgttggcttatttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagtt 37273188  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 22667547 - 22667479
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaaca 225  Q
    |||||||||||||||||||| ||| | ||||| |||||  ||| ||||||| || || |||||||||||    
T  22667547 attggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaaca 22667479  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 22724186 - 22724118
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaaca 225  Q
    |||||||||||||||||||| ||| | ||||| |||||  ||| ||||||| || || |||||||||||    
T  22724186 attggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaaca 22724118  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 44014724 - 44014792
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaaca 225  Q
    ||||||||||||||| |||| |||  ||||||||||||  ||| ||||||| |||| |||||| |||||    
T  44014724 attggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaaca 44014792  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 1889066 - 1889123
Alignment:
Q  162 cttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatg 219  Q
    |||||||||| |||| ||| |||||||||||||| ||| |||||||||||||||||||    
T  1889066 cttatttgagtttatctactggcataaacacttttgagactgtttgggaaagcttatg 1889123  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 24326173 - 24326107
Alignment:
Q  159 tggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaaca 225  Q
    ||||| |||||||||||| ||| ||||||| |||||  ||| |||||||||| ||||||||||||||    
T  24326173 tggctaatttgagcttatctactggcataagcacttgtgagactgtttgggagagcttatggaaaca 24326107  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 7714386 - 7714317
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaa 226  Q
    |||| ||||||||||||||| ||  | |||||||||||  ||| |||||||| ||||||| |||||||||    
T  7714386 attgacttatttgagcttatataatgtcataaacacttgtgagactgtttggaaaagcttgtggaaacaa 7714317  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 16162904 - 16162836
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaaca 225  Q
    ||||||||||||||| |||| |||  ||||||||||||  ||| ||||||| |||| |||||| |||||    
T  16162904 attggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaaca 16162836  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 37954843 - 37954763
Alignment:
Q  145 ggaccagattgtattggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaaca 225  Q
    ||||||| ||| |||||||||||||||||||| ||| |||||||| | ||||||| ||||| |||| || ||||| |||||    
T  37954843 ggaccagtttggattggcttatttgagcttatctacaggcataaaaaatttagagactgttcgggagagtttatgaaaaca 37954763  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 11457247 - 11457154
Alignment:
Q  152 attgtattggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaaactatagcatgtccataag 245  Q
    ||||| ||| ||||||||||||||| ||  |||| ||||||||  ||| |||||| | | |||||||||||||||  |||  ||||||||||||    
T  11457247 attgtgttgacttatttgagcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccataag 11457154  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 14980648 - 14980592
Alignment:
Q  162 cttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttat 218  Q
    ||||||||||||||| ||| ||||||| |||| ||||| ||||||| || |||||||    
T  14980648 cttatttgagcttatctactggcataagcactatagagactgtttgagagagcttat 14980592  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 19429396 - 19429457
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttat 218  Q
    |||||||||||||||||||| ||| || ||||||||||  ||| |||||||||| |||||||    
T  19429396 attggcttatttgagcttatttactggtataaacacttgtgagactgtttgggagagcttat 19429457  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 10365919 - 10365829
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaaactatagcatgtccataagtt 247  Q
    |||| ||||||| | ||||| ||| | ||||||||||  |||| || |||| || ||||||| |||||||| |||| ||||||||||||||    
T  10365919 attgacttatttaatcttatctactgacataaacactggagagactatttgagacagcttatcgaaacaaattataacatgtccataagtt 10365829  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 18628486 - 18628548
Alignment:
Q  164 tatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaa 226  Q
    ||||||||||||| ||| | |||||||||||  ||| |||||||||| |||||||| ||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaa 18628548  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 1075602 - 1075565
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactt 194  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  1075602 attggcttatttgagcttatctactggcataaacactt 1075565  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 25717737 - 25717668
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaa 226  Q
    |||| ||||||||||||||||||||| ||||| |||||  ||   ||||||| | |||||||||||||||    
T  25717737 attgtcttatttgagcttatgtaccgacataagcacttgtgaaattgtttggaagagcttatggaaacaa 25717668  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 29126189 - 29126226
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactt 194  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  29126189 attggcttatttgagcttatctaccggcataagcactt 29126226  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 10079265 - 10079333
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaaca 225  Q
    |||||||||||||||||||| |||  ||||||||||||  |||  ||||||||| ||||||| ||||||    
T  10079265 attggcttatttgagcttatttacgagcataaacacttatgaggttgtttgggagagcttatagaaaca 10079333  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 31341279 - 31341210
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaa 226  Q
    |||| ||||||||||||| | |||  |||||||||||||  || |||||||||| || ||||||||||||    
T  31341279 attgacttatttgagcttttctacttgcataaacacttttaagactgtttgggagagtttatggaaacaa 31341210  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 529512 - 529444
Alignment:
Q  151 gattgtattggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatg 219  Q
    ||||| |||| ||||||||||||||| ||| |||||||||||||  ||| || ||||||| | ||||||    
T  529512 gattggattgacttatttgagcttatctactggcataaacacttgtgaggctatttgggagaacttatg 529444  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 1418563 - 1418495
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaaca 225  Q
    |||| ||||||||||||||| ||| ||||||| |||||  ||| ||||||| || ||||||| ||||||    
T  1418563 attgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttatagaaaca 1418495  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 3610666 - 3610734
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaaca 225  Q
    |||||||||||||||||||| ||| ||| ||| |||||  ||  || ||||||||| ||||||||||||    
T  3610666 attggcttatttgagcttatctactggcctaaccacttgtgatactttttgggaaaccttatggaaaca 3610734  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 2455960 - 2455885
Alignment:
Q  151 gattgtattggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaa 226  Q
    ||||| |||| ||||||||||||||| ||||||||||| |||||  |||  ||||| | | |||||||||||||||    
T  2455960 gattgaattgacttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaa 2455885  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 32917313 - 32917253
Alignment:
Q  185 ataaacactttagagcctgtttgggaaagcttatggaaacaaactatagcatgtccataag 245  Q
    ||||||||||  ||| |||||||||| |||||||||||||||  |||  ||||||||||||    
T  32917313 ataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccataag 32917253  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 4549467 - 4549536
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaa 226  Q
    ||||||||||||||| |||| ||| ||||||| || ||  ||| |||||||||| ||||||| |||||||    
T  4549467 attggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaa 4549536  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 28803456 - 28803544
Alignment:
Q  157 attggcttatttgagcttatgtaccggcataaacactttagagcctgtttgggaaagcttatggaaacaaactatagcatgtccataag 245  Q
    |||| ||||||||||||||| ||||||||||| ||| |  ||| ||||||| || | | |||||||||||  |||  ||||||||||||    
T  28803456 attgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatgtccataag 28803544  T

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