View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1303_low_1 (Length: 591)
Name: NF1303_low_1
Description: NF1303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1303_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 15 - 493
Target Start/End: Original strand, 17924854 - 17925332
Alignment:
| Q |
15 |
tattataagatatcgaaaacttgtggagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17924854 |
tattataagatatcgaaaacttgtgtagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc |
17924953 |
T |
|
| Q |
115 |
caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17924954 |
caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg |
17925053 |
T |
|
| Q |
215 |
tttgcaatcgaaaaagggattggacctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17925054 |
tttgcaatcgaaaaagggattggacctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagc |
17925153 |
T |
|
| Q |
315 |
cgagaaagttattttgttccaccgcaagggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17925154 |
cgagaaagttattttgttccaccgcaagggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaa |
17925253 |
T |
|
| Q |
415 |
aaatgtcaagtgtttgcggcaacatatttcttgtggaatatctccctcaaaattgttaagagcagctgatagacgtgtt |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17925254 |
aaatgtcaagtgtttgcggcaacatatttcttgtggaatatctccctcaaaattgttaagagcagctgatagacgtgtt |
17925332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 493
Target Start/End: Complemental strand, 12956839 - 12956361
Alignment:
| Q |
15 |
tattataagatatcgaaaacttgtggagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc |
114 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||| | | ||||||||||||| || |
|
|
| T |
12956839 |
tattataagatatcgaaagcttgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
12956740 |
T |
|
| Q |
115 |
caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
12956739 |
caaatttagattggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttgtctcctaagtctaatatttgtagggcagaagca |
12956640 |
T |
|
| Q |
215 |
tttgcaatcgaaaaagggattggacctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagc |
314 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12956639 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaatcgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagc |
12956540 |
T |
|
| Q |
315 |
cgagaaagttattttgttccaccgcaagggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaa |
414 |
Q |
| |
|
| ||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12956539 |
catgaaggttattttgtgttaccgcaagggcaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcacccaaagctaa |
12956440 |
T |
|
| Q |
415 |
aaatgtcaagtgtttgcggcaacatatttcttgtggaatatctccctcaaaattgttaagagcagctgatagacgtgtt |
493 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
12956439 |
aaatgtcaagtgtttgcagcaacatatttcttgtggaatatctccctcaaaattgttacgagaagctgatagacgtgtt |
12956361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 41 - 493
Target Start/End: Complemental strand, 12905922 - 12905469
Alignment:
| Q |
41 |
agtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||| | ||||| ||||||||||||| | ||||| |
|
|
| T |
12905922 |
agtttactgcaatttgtcaaatattttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttgta |
12905823 |
T |
|
| Q |
141 |
aattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcgtttgcaatcgaaaaagggattggacc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
12905822 |
aattccctagacttggaacttgtccaaccaaattcatgttttttgataagtctaatatttgtagggcagaagcattatcaatcgaaatagggattggacc |
12905723 |
T |
|
| Q |
241 |
tgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagccgagaaagttattttgttccaccgca |
340 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
12905722 |
agagaattgatttgatgcaaaatgtaataatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttcttccaccgca |
12905623 |
T |
|
| Q |
341 |
agggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattg-ttctcacccaaagctaaaaatgtcaagtgtttgcggcaacat |
439 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
12905622 |
agggtaataagtgatgagatattataaagacaagaaggtatcttaccggacaaattgtttctcacccaaagctaaaaatgtcaagtgtttgaggaaacat |
12905523 |
T |
|
| Q |
440 |
atttcttgtggaatatctccctcaaaattgttaagagcagctgatagacgtgtt |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
12905522 |
atttcttgtggaatatctccctcaaaattgttaccagaaactgatagacgtgtt |
12905469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 15 - 453
Target Start/End: Complemental strand, 12931037 - 12930599
Alignment:
| Q |
15 |
tattataagatatcgaaaacttgtggagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc |
114 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
12931037 |
tattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattgttacctaaattgttaacttc |
12930938 |
T |
|
| Q |
115 |
caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg |
214 |
Q |
| |
|
|||| |||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
12930937 |
caaacttaggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatatttgtagggcagaagca |
12930838 |
T |
|
| Q |
215 |
tttgcaatcgaaaaagggattggacctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagc |
314 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||| || |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12930837 |
tttgcaatcgaagtagggattggacctgagaattgatttgctgcaaaagcgaatatttgaatattggggagggtgtggaacatgttgggtggaaaagagc |
12930738 |
T |
|
| Q |
315 |
cgagaaagttattttgttccaccgcaagggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaa |
414 |
Q |
| |
|
| ||| || ||| ||| |||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| || | |||| |
|
|
| T |
12930737 |
catgaaggtgattctgtgttaccgtaagggaaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcactcacacctaa |
12930638 |
T |
|
| Q |
415 |
aaatgtcaagtgtttgcggcaacatatttcttgtggaat |
453 |
Q |
| |
|
|| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
12930637 |
aattgtcaagtgtttgaggaaacatatttcttgtggaat |
12930599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 41 - 471
Target Start/End: Complemental strand, 12898301 - 12897870
Alignment:
| Q |
41 |
agtttactgcaatttgtcaaatattttaaaaactctaaa-tccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||| | | |||||||||||| | ||||| ||||||||||||| | |||| |
|
|
| T |
12898301 |
agtttactgcaatttgtcaaatattttaaaaaatctaaaatccatagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttgt |
12898202 |
T |
|
| Q |
140 |
aaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcgtttgcaatcgaaaaagggattggac |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||| ||||||| |
|
|
| T |
12898201 |
aaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggtagaagcattagcaatcgaaataggaattggac |
12898102 |
T |
|
| Q |
240 |
ctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagccgagaaagttattttgttccaccgc |
339 |
Q |
| |
|
| ||||||||||||||| |||||| || | |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||| |
|
|
| T |
12898101 |
cagagaattgatttcctccaaaatgtaaaaatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgccga |
12898002 |
T |
|
| Q |
340 |
aagggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaaaaatgtcaagtgtttgcggcaacat |
439 |
Q |
| |
|
||| | ||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||| |||| ||||| |||||||||||||| || ||||| |
|
|
| T |
12898001 |
aagtgtaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacat |
12897902 |
T |
|
| Q |
440 |
atttcttgtggaatatctccctcaaaattgtt |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12897901 |
atttcttgtggaatatctccctcaaaattgtt |
12897870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 15 - 471
Target Start/End: Complemental strand, 12947402 - 12946946
Alignment:
| Q |
15 |
tattataagatatcgaaaacttgtggagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc |
114 |
Q |
| |
|
|||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||| ||| |
|
|
| T |
12947402 |
tattttaagatatcgaaagcatgtttagtttactgcaatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattc |
12947303 |
T |
|
| Q |
115 |
caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg |
214 |
Q |
| |
|
|||| |||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
12947302 |
caaacttaggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtgtcctaagtctaatctttgtagggcagaagca |
12947203 |
T |
|
| Q |
215 |
tttgcaatcgaaaaagggattggacctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagc |
314 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||||||||||| || |||||| |||| || ||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
12947202 |
tttgcaattgaaataggaattggacctgagaattgatttgctccaaaatagaatagttcaagattggggagggtgtggaacatgttgggtgcaaaagagc |
12947103 |
T |
|
| Q |
315 |
cgagaaagttattttgttccaccgcaagggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaa |
414 |
Q |
| |
|
| ||| || ||| || |||| |||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
12947102 |
catgaaggtgattcagtgttaccgaaaggacaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcattcaaagctaa |
12947003 |
T |
|
| Q |
415 |
aaatgtcaagtgtttgcggcaacatatttcttgtggaatatctccctcaaaattgtt |
471 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12947002 |
aaatgtcaagtgtttgagaaaacatatttcttgtggaatgtctccctcaaaattgtt |
12946946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 409
Target Start/End: Complemental strand, 12930604 - 12930571
Alignment:
| Q |
376 |
tggaatcttaccggaaaaattgttctcacccaaa |
409 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
12930604 |
tggaatcttaccggagaaattgttctcacccaaa |
12930571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 42 - 278
Target Start/End: Original strand, 10764610 - 10764843
Alignment:
| Q |
42 |
gtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgtaa |
141 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| | | ||| | |||||| |
|
|
| T |
10764610 |
gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa |
10764709 |
T |
|
| Q |
142 |
attccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcgtttgcaatcgaaaaagggattggacct |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| | || ||||| || ||||| | ||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
10764710 |
attccctagacttggaacttgtccaaccaatt---tgtttgttcctatgtctagtaattgtatgacagaagcatttgcaatcgaaacagggattgtacct |
10764806 |
T |
|
| Q |
242 |
gagaattgatttcctgcaaaatcaaatattttaagat |
278 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
10764807 |
gagaattgatttcctccaaaatttaatattttaagat |
10764843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 10610468 - 10610178
Alignment:
| Q |
15 |
tattataagatatcgaaaacttgtggagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc |
114 |
Q |
| |
|
|||||| |||||| |||| ||| | |||||||| || ||||||||||||||||||||||||||||| ||||||||||| | ||| |||| ||| | ||| |
|
|
| T |
10610468 |
tattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaaactctaaatctatagttgaattgttaccgaaatagttgtattc |
10610369 |
T |
|
| Q |
115 |
caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg |
214 |
Q |
| |
|
|||| | || | |||| ||| |||| ||| ||||||||||||||||||||||||||| |||||| ||| || | ||||||||||| |||||| |
|
|
| T |
10610368 |
caaactcagccagtaaagatctggtaacttctctagacttggaacttgtccaaccaaat---tgttttgacctaaatcaattatttgtagggaagaagca |
10610272 |
T |
|
| Q |
215 |
tttgcaatcgaaaaagggattggacctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaa |
308 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||| || ||||| ||| ||||| |||||||||| || ||||||||||||| |
|
|
| T |
10610271 |
tttgcaatggaaacagggattggacctgagaattgatttcctccaggttcaaaagatttgagattagggagggtgtaaaacatgttgggtggaa |
10610178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 346 - 459
Target Start/End: Original strand, 10764876 - 10764989
Alignment:
| Q |
346 |
aataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaaaaatgtcaagtgtttgcggcaacatatttct |
445 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||| |||||||||||||| |||| ||| |||||||||| |
|
|
| T |
10764876 |
aataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagtttttgaggcgacatatttct |
10764975 |
T |
|
| Q |
446 |
tgtggaatatctcc |
459 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10764976 |
tgtggaatatctcc |
10764989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 41 - 253
Target Start/End: Complemental strand, 10563759 - 10563550
Alignment:
| Q |
41 |
agtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgta |
140 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| | |||||||||||| | | | ||| |||| | |||| ||||||| |
|
|
| T |
10563759 |
agtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaagatcttgta |
10563660 |
T |
|
| Q |
141 |
aattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcgtttgcaatcgaaaaagggattggacc |
240 |
Q |
| |
|
| ||| ||||||||||||||||||| ||||||| ||||| | |||||| | || |||||||| |||||| ||| |||| |||| |||||||||||| |
|
|
| T |
10563659 |
acttctctagacttggaacttgtcccaccaaat---agttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggacc |
10563563 |
T |
|
| Q |
241 |
tgagaattgattt |
253 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10563562 |
tgagaattgattt |
10563550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 10748492 - 10748624
Alignment:
| Q |
41 |
agtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgta |
140 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||| | ||| |||| ||| |||||||||||||| | |||| ||||||| |
|
|
| T |
10748492 |
agtttactacaatttgtcaaatactttaaaaactctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagccagtaaagatcttgta |
10748591 |
T |
|
| Q |
141 |
aattccctagacttggaacttgtccaaccaaat |
173 |
Q |
| |
|
| ||| |||||||||||||||| || ||||||| |
|
|
| T |
10748592 |
acttctctagacttggaacttgccccaccaaat |
10748624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 41 - 252
Target Start/End: Original strand, 10653676 - 10653887
Alignment:
| Q |
41 |
agtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgta |
140 |
Q |
| |
|
|||||||| || |||||||| ||||||||| ||||||||| |||||| ||| || ||||||||||| ||| | |||||| ||| || |||| |
|
|
| T |
10653676 |
agtttactacagtttgtcaaggtttttaaaaattctaaatccttagttgtattgtctcctaaattgttaaattctagatttagccgttgaagatcatgta |
10653775 |
T |
|
| Q |
141 |
aattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcgtttgcaatcgaaaaagggattggacc |
240 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||| | | || |||||||| | | || ||||| |||||| |||||||| |||| |||||||| ||| |
|
|
| T |
10653776 |
aattccccagacttggaacttgtccgagcaaattattttgatcagataagtcgagttcttttagggaagaagcatttgcaatggaaatagggattgtacc |
10653875 |
T |
|
| Q |
241 |
tgagaattgatt |
252 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10653876 |
tgagaattgatt |
10653887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 300
Target Start/End: Original strand, 10742185 - 10742435
Alignment:
| Q |
50 |
caatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgtaaattcccta |
149 |
Q |
| |
|
||||||||||||||| |||||||| |||||| || | |||||| | |||||||||||| | |||||||| | ||| || ||||| ||||| | |
|
|
| T |
10742185 |
caatttgtcaaatatcttaaaaacattaaatctatggctgaattgttacctaaattgttagactgcaaatttaatctttgaagatcctgtaacttcccaa |
10742284 |
T |
|
| Q |
150 |
gacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcgtttgcaatcgaaaaagggattggacctgagaattg |
249 |
Q |
| |
|
|| |||||||||||||||||||||| | | || ||| || | | ||||| ||||||||| |||||||| |||| |||||||||||||| |||||| |
|
|
| T |
10742285 |
gatttggaacttgtccaaccaaattgttttgatcacctaaatcaagtgattgtaaggcagaagcatttgcaatggaaatagggattggacctgtgaattg |
10742384 |
T |
|
| Q |
250 |
atttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgtt |
300 |
Q |
| |
|
|||| || |||| ||||| || | |||||||| ||| ||||||| ||||| |
|
|
| T |
10742385 |
atttactccaaattcaaaaataattagattgggtaggttgtggaacatgtt |
10742435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 10603482 - 10603353
Alignment:
| Q |
44 |
ttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgtaaat |
143 |
Q |
| |
|
||||| || |||||||| ||||||||||||| ||||| || ||||| || ||||||||| |||| |||||||||||| | |||| |||| || | |
|
|
| T |
10603482 |
ttactacagtttgtcaatgattttaaaaactccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagct |
10603383 |
T |
|
| Q |
144 |
tccctagacttggaacttgtccaaccaaat |
173 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
10603382 |
tccctagacttggaacttgtccaacaaaat |
10603353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 10218232 - 10218305
Alignment:
| Q |
50 |
caatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag |
123 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| | |||||||| |||||||||| ||| | ||||||| |||| |
|
|
| T |
10218232 |
caatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttag |
10218305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 256
Target Start/End: Complemental strand, 7191737 - 7191525
Alignment:
| Q |
41 |
agtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgta |
140 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||||| |||| ||||| | ||||||| ||||| || | ||||| ||| || |||| |
|
|
| T |
7191737 |
agtttactacagtttgtcaaggattttaaaaactctaaatccttagtggaattgttacctaaactgtttagctctagatttaaccgtcgaagatcatgta |
7191638 |
T |
|
| Q |
141 |
aattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatt-tgtagggcagaagcgtttgcaatcgaaaaagggattggac |
239 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||| |||||| |||||| || ||| ||||| |||||| |||| ||| |||| |||||||| || |
|
|
| T |
7191637 |
acttccctagacttggaacttgtccgaccaaat---tgttttgatctaagtc-aagattaaatagggaagaagcatttgaaatggaaatagggattgtac |
7191542 |
T |
|
| Q |
240 |
ctgagaattgatttcct |
256 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7191541 |
ctgagaattgatttcct |
7191525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 10748798 - 10748855
Alignment:
| Q |
350 |
agtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcaccca |
407 |
Q |
| |
|
||||||||||| |||||||||||||| |||| | |||| || |||||||||||||||| |
|
|
| T |
10748798 |
agtgatgagatattataaagacaagaaggaaacataccagacaaattgttctcaccca |
10748855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 10549133 - 10549097
Alignment:
| Q |
436 |
acatatttcttgtggaatatctccctcaaaattgtta |
472 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10549133 |
acatatttcttgtggaatatctccctccaaattgtta |
10549097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 10718420 - 10718508
Alignment:
| Q |
86 |
gttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaatt |
174 |
Q |
| |
|
||||| || ||||||||||||||| || ||||||||||| ||| | |||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
10718420 |
gttgagttttcacctaaattgtttgattgcaaatttagaaatcgaagattttgtaactcccctatacttggaacttgtccaaccaaatt |
10718508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 10549522 - 10549443
Alignment:
| Q |
44 |
ttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag |
123 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||||||||| |||||||||| ||||| | ||| ||| |||||||||||| |
|
|
| T |
10549522 |
ttactacaatttgtcaatggttttaaaaattctaaatccttagttgaattgtcaccaagattatttatttccaaatttag |
10549443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 10557277 - 10557224
Alignment:
| Q |
419 |
gtcaagtgtttgcggcaacatatttcttgtggaatatctccctcaaaattgtta |
472 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||||||||||||| || |||||| |
|
|
| T |
10557277 |
gtcaagtgttttaggcgacatatttcttggggaatatctccctctaagttgtta |
10557224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 10599793 - 10599688
Alignment:
| Q |
68 |
aaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaa |
167 |
Q |
| |
|
||||||| |||||||| ||||| | ||||||||| |||| |||||||||||| | |||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
10599793 |
aaaaactgcaaatccattgttgagctgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaa |
10599694 |
T |
|
| Q |
168 |
ccaaat |
173 |
Q |
| |
|
| |||| |
|
|
| T |
10599693 |
caaaat |
10599688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 10579717 - 10579657
Alignment:
| Q |
63 |
attttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag |
123 |
Q |
| |
|
|||||||||||||||||||| || | ||||| |||||||| ||||| |||| |||| |||| |
|
|
| T |
10579717 |
attttaaaaactctaaatccttactggaattgtcacctaatttgttatcttgcaaacttag |
10579657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 10589926 - 10589986
Alignment:
| Q |
63 |
attttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag |
123 |
Q |
| |
|
|||||||||||||||||||| || | ||||| |||||||| ||||| |||| |||| |||| |
|
|
| T |
10589926 |
attttaaaaactctaaatccttactggaattgtcacctaatttgttatcttgcaaacttag |
10589986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University