View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1303_low_17 (Length: 257)
Name: NF1303_low_17
Description: NF1303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1303_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 5121837 - 5121696
Alignment:
| Q |
5 |
cttacatatctatctttcattttttgttcatttttattgtctttcatgggattcacaagtaatccaaatcttggaggtattgtgatactcttatagtgtg |
104 |
Q |
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| T |
5121837 |
cttacatatctatctttcattttttgttcatttttattgtctttcatgggattcacaagtaatccaaatcttggaggtattgtgatactcttatagtgtg |
5121738 |
T |
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| Q |
105 |
atttaaattgtttgtgtgctcctctaccaacatatatacaaa |
146 |
Q |
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| T |
5121737 |
atttaaattgtttgtgtgctcctctaccaacatatatacaaa |
5121696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 40809567 - 40809504
Alignment:
| Q |
12 |
atctatctttcatttt-ttgttcatttttattgtctttcatgggattcacaagtaatccaaatc |
74 |
Q |
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| T |
40809567 |
atctatctttcagtttgttgttcatttttaatttgtttcatgggattcacaagtaaaccaaatc |
40809504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 40809316 - 40809245
Alignment:
| Q |
101 |
tgtgatttaaattgtttgtgtgctcctctaccaacatatatacaaattgtgatacactaccctatgatacta |
172 |
Q |
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| T |
40809316 |
tgtgatttaaatagtttgtgtgccactttgtcaacatagattcaaattgtgatacactacattatgatacta |
40809245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 40814247 - 40814177
Alignment:
| Q |
25 |
tttttgttcatttttattgtctttcatgggattcacaagtaatccaaatcttggaggtattgtgatactctt |
96 |
Q |
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| T |
40814247 |
tttttgtttatttttaatgtctttgatggaattcacaa-taatcctaatcttggaggaatagtgacactctt |
40814177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 9515304 - 9515397
Alignment:
| Q |
27 |
tttgttcatttttattgtctttcatgggattcacaagtaatccaaatc-ttggaggtattgtgatactcttatagtgtgatttaaattgtttgt |
119 |
Q |
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| T |
9515304 |
tttgtgcatttttaatatctttcatggaaatctcaagaaatccaaatctttggagaagttgtgatactctgaaactgttatttaaattgtttgt |
9515397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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