View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1303_low_2 (Length: 560)
Name: NF1303_low_2
Description: NF1303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1303_low_2 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 87 - 553
Target Start/End: Original strand, 972941 - 973408
Alignment:
| Q |
87 |
aactactacatattaaaaagttattggacgtctcttgtagattgttgtattctggaactttgaaaagattcattacacaaatatgtatcttccaatataa |
186 |
Q |
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| T |
972941 |
aactactacatattaaaaagttattggacgtctcttgtagattgttgtattctggaactttgaaatgattcattacacaaatatgtatcttccaatataa |
973040 |
T |
|
| Q |
187 |
taccaagtctccgctagctcaactctgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagctatagcagatgaata |
286 |
Q |
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| T |
973041 |
taccaagtctccgctagctcaactctgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagctatagcagatgaata |
973140 |
T |
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| Q |
287 |
tcgaaggtgaaatttacctttcagttccaactttgtctagcaggaatgg-ttttttatatacattgactaattgcaaaatttccatgccaaataatattg |
385 |
Q |
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| T |
973141 |
tccaaggtgaaatttacctttcagttccaactttgtctagcaggaatggtttttttatatacattgactaattgcaaaatttccatgccaaataatattg |
973240 |
T |
|
| Q |
386 |
ataaaaatgacatattaactttgaatagagcaggaagtcttgtgtcttagattctacgacgacaatgacagtgaataacacttttggcctttggattgtg |
485 |
Q |
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| T |
973241 |
ataaaaatgacatgttaactttgaatagagcaggaagtcttgtgtcttagattctacgacgacaatgacagtgaataacacttttggcctttggattgtg |
973340 |
T |
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| Q |
486 |
acacgacaggcttgatctttctctgtgttggtatggtctaatatagttcaactcctttagtataatct |
553 |
Q |
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| T |
973341 |
acacgacaggcttgatctttctctgagttggtatggtctaatatagttcaactcctttagtataatct |
973408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 212 - 433
Target Start/End: Original strand, 8527693 - 8527934
Alignment:
| Q |
212 |
tgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagctatagcagatgaatatcgaaggtg--------aaatttac |
303 |
Q |
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| T |
8527693 |
tgttcaattacagcttctggtttgtatgttctgtttccaatgaaaaggccaattgttagctatagcagaggaatatcgaaggtgaaatgggtaaatttac |
8527792 |
T |
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| Q |
304 |
ctttcagttccaactttgtctagcaggaatggttttttatat--------acattg-----actaattgcaaaatttccatgccaaataatattgataaa |
390 |
Q |
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| T |
8527793 |
ctcgtagtttcaattttgtctagcagcaatgg-tttttatattaccagcgacattgcatcaactagttgcaaaattttcatgccaaataatactaataaa |
8527891 |
T |
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| Q |
391 |
aatgacatattaactttgaatagagcaggaagtcttgtgtctt |
433 |
Q |
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| T |
8527892 |
aatggcaccttaaccttgaatagagcaggaagtcttgtgtctt |
8527934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 459 - 553
Target Start/End: Original strand, 8528322 - 8528416
Alignment:
| Q |
459 |
aataacacttttggcctttggattgtgacacgacaggcttgatctttctctgtgttggtatggtctaatatagttcaactcctttagtataatct |
553 |
Q |
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| T |
8528322 |
aataacattttcggcgtttggtttgtgacacgacaggcttgatctttctatgtgttggtatggtctaatatagttcaactcatttagtataatct |
8528416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 8369047 - 8369125
Alignment:
| Q |
207 |
aactctgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagctatagcagatgaat |
285 |
Q |
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| T |
8369047 |
aactctcttcaattgcagcttctggtttgtgtggtctgtaaccaatgcataggtcatttgttagccatagcagaggaat |
8369125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 8410349 - 8410406
Alignment:
| Q |
214 |
ttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagc |
271 |
Q |
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| T |
8410349 |
ttcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgttagc |
8410406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 3186 - 3145
Alignment:
| Q |
354 |
taattgcaaaatttccatgccaaataatattgataaaaatga |
395 |
Q |
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| T |
3186 |
taattgcaaaatttccatgacaaataataatgttaaaaatga |
3145 |
T |
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