View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1303_low_21 (Length: 250)

Name: NF1303_low_21
Description: NF1303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1303_low_21
NF1303_low_21
[»] chr8 (10 HSPs)
chr8 (47-160)||(21523626-21523741)
chr8 (166-234)||(7857878-7857946)
chr8 (163-232)||(44665248-44665317)
chr8 (162-226)||(43926536-43926600)
chr8 (177-234)||(13585103-13585160)
chr8 (161-226)||(34524147-34524212)
chr8 (162-226)||(3471381-3471445)
chr8 (163-219)||(18111603-18111659)
chr8 (176-226)||(5869527-5869577)
chr8 (163-203)||(1003902-1003942)
[»] chr6 (9 HSPs)
chr6 (168-234)||(6360555-6360621)
chr6 (162-234)||(3515056-3515128)
chr6 (171-231)||(12622168-12622228)
chr6 (171-234)||(31258663-31258726)
chr6 (169-222)||(24455014-24455067)
chr6 (180-226)||(2618161-2618207)
chr6 (185-226)||(57498-57539)
chr6 (169-226)||(6754001-6754058)
chr6 (162-231)||(29400928-29400997)
[»] chr3 (13 HSPs)
chr3 (163-234)||(8363960-8364031)
chr3 (162-234)||(23067930-23068002)
chr3 (162-234)||(41707260-41707332)
chr3 (163-234)||(27111012-27111082)
chr3 (169-234)||(6715245-6715310)
chr3 (163-234)||(21784988-21785059)
chr3 (176-234)||(28132940-28132998)
chr3 (163-231)||(51939763-51939831)
chr3 (176-231)||(24252420-24252475)
chr3 (163-234)||(29387959-29388030)
chr3 (171-234)||(46791902-46791965)
chr3 (163-234)||(51064289-51064360)
chr3 (163-231)||(52655332-52655399)
[»] scaffold0126 (1 HSPs)
scaffold0126 (170-234)||(16500-16564)
[»] chr2 (13 HSPs)
chr2 (162-234)||(13020209-13020281)
chr2 (176-240)||(45618778-45618842)
chr2 (163-234)||(36481194-36481265)
chr2 (170-240)||(4855785-4855855)
chr2 (162-240)||(26151945-26152023)
chr2 (171-234)||(25222119-25222182)
chr2 (163-234)||(42759952-42760023)
chr2 (176-234)||(19367623-19367681)
chr2 (171-223)||(18676527-18676579)
chr2 (163-234)||(42411762-42411833)
chr2 (163-220)||(7993422-7993479)
chr2 (163-234)||(6530448-6530519)
chr2 (182-226)||(2063616-2063660)
[»] chr1 (11 HSPs)
chr1 (166-234)||(48722577-48722645)
chr1 (162-234)||(51110307-51110379)
chr1 (163-234)||(18128144-18128215)
chr1 (162-234)||(6150493-6150565)
chr1 (171-234)||(14084905-14084968)
chr1 (171-234)||(20470524-20470587)
chr1 (163-234)||(17487490-17487561)
chr1 (171-234)||(33124837-33124900)
chr1 (180-234)||(50552299-50552353)
chr1 (164-197)||(10109507-10109540)
chr1 (182-219)||(52055357-52055394)
[»] chr7 (13 HSPs)
chr7 (163-234)||(42161327-42161398)
chr7 (176-234)||(38524986-38525044)
chr7 (167-231)||(8358501-8358565)
chr7 (178-226)||(33909870-33909918)
chr7 (163-234)||(27432381-27432452)
chr7 (176-234)||(46221907-46221965)
chr7 (180-234)||(18015785-18015839)
chr7 (163-240)||(36796569-36796645)
chr7 (163-234)||(33419321-33419392)
chr7 (163-217)||(4099741-4099795)
chr7 (169-226)||(12251600-12251657)
chr7 (163-226)||(44877006-44877069)
chr7 (163-201)||(11672389-11672427)
[»] chr4 (12 HSPs)
chr4 (176-234)||(39372866-39372924)
chr4 (171-234)||(53011512-53011574)
chr4 (176-234)||(11681948-11682006)
chr4 (176-234)||(11690227-11690285)
chr4 (163-234)||(21168845-21168916)
chr4 (176-226)||(27632203-27632253)
chr4 (168-222)||(41038042-41038096)
chr4 (179-234)||(28463793-28463848)
chr4 (161-240)||(44477825-44477904)
chr4 (163-221)||(32131007-32131065)
chr4 (171-234)||(19661177-19661239)
chr4 (176-234)||(23256396-23256454)
[»] chr5 (8 HSPs)
chr5 (171-234)||(13423657-13423720)
chr5 (176-234)||(8398780-8398838)
chr5 (176-240)||(36718766-36718830)
chr5 (163-234)||(26377981-26378052)
chr5 (176-222)||(12661105-12661151)
chr5 (176-234)||(13474429-13474487)
chr5 (182-226)||(19099528-19099572)
chr5 (161-224)||(10591468-10591531)
[»] scaffold0181 (1 HSPs)
scaffold0181 (171-234)||(18166-18229)
[»] scaffold0035 (1 HSPs)
scaffold0035 (177-234)||(22969-23026)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 21523626 - 21523741
Alignment:
Q  47 gaagggttgattgtgtccatgtcttgtatgtcattgacatgtgttggacatagacatgccttcactcttaattgtggat--acactaacaagaatgtaca 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| |||| |||    
T  21523626 gaagggttgattgtgtccatgtcttgtatgtcattgacatgtgttggagatagacatgccttcactcttaattgtggatacacactaacaaaaatgaaca 21523725  T
Q  145 aaactaataaggtgag 160  Q
    ||||||| ||||||||    
T  21523726 aaactaacaaggtgag 21523741  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 7857878 - 7857946
Alignment:
Q  166 gtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||||| |||||||||| | |||||||    
T  7857878 gtccggccttgagggtgtgcaaggtgctcaaccaggtcgggcctccaattgctacgggcttctaacgaa 7857946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 44665317 - 44665248
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacg 232  Q
    |||| ||| ||| ||||||||| ||||||||||| || ||| |||||||||||||||||||||| |||||    
T  44665317 caggcccgaccttgagggtgtgtaaggtgctcaatcaagccgggcctccaaatgctacgggcctctaacg 44665248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 43926600 - 43926536
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    ||||| ||||||| ||||||||||||||||||||| |||| | || |||||||||| ||||||||    
T  43926600 ccaggcccggccttgagggtgtgcaaggtgctcaatcaggtcgggtctccaaatgccacgggcct 43926536  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 13585103 - 13585160
Alignment:
Q  177 agggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||||||||||| ||| || ||||| ||||||| |||||||| |||||||    
T  13585103 agggtgtgcaaggtgctcaatcagaccgggccttcaaatgcaacgggcctctaacgaa 13585160  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 34524212 - 34524147
Alignment:
Q  161 gccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    |||||| ||||||| ||||| ||||||||||||||| || ||| | |||||||| |||||||||||    
T  34524212 gccaggcccggccttgagggagtgcaaggtgctcaatcaagccggacctccaaaagctacgggcct 34524147  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 3471381 - 3471445
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    ||||| ||||||| | ||| ||||||| |||||||||||| | | ||||||||||||||||||||    
T  3471381 ccaggcccggccttgggggagtgcaagatgctcaaccaggtcggacctccaaatgctacgggcct 3471445  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 18111603 - 18111659
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgcta 219  Q
    |||| ||||||| ||||||||||||||||||||| |||| | | |||||||||||||    
T  18111603 caggcccggccttgagggtgtgcaaggtgctcaatcaggtcggacctccaaatgcta 18111659  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 5869577 - 5869527
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    ||||| ||||||||||||| |||||||| |||||||||||| ||| |||||    
T  5869577 gagggagtgcaaggtgctctaccaggccgggcctccaaatggtactggcct 5869527  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 1003902 - 1003942
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggcc 203  Q
    |||| ||||||| |||||||||||| |||||||||||||||    
T  1003902 caggcccggccttgagggtgtgcaaagtgctcaaccaggcc 1003942  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 6360555 - 6360621
Alignment:
Q  168 ccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  6360555 ccggccttgagggtgtgcaaggtgctcaatcaggccaggcctccaaatgctacgggcctctaacgaa 6360621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 3515128 - 3515056
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||| ||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||    
T  3515128 ccaggcccggccttgagggtgtgcaaggtgctcaaccaagccgggcctacaaatgctacgggcctctaacgaa 3515056  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 12622228 - 12622168
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaac 231  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  12622228 gccttgagggtgtgcaaggtgctcaaccaggccgggcctccaaatgctacggacctctaac 12622168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 31258726 - 31258663
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| |||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||    
T  31258726 gccttgagggtgtgcaaggtgctcaaccaggccggacctacaaatgctacgggcctctaacgaa 31258663  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 24455014 - 24455067
Alignment:
Q  169 cggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgg 222  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||||||||    
T  24455014 cggccttgagggtgtgcaaggtgctcaaccaggtcgggcctccaaatgctacgg 24455067  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 2618161 - 2618207
Alignment:
Q  180 gtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    |||||||||||||||||||||| | || ||||||||| |||||||||    
T  2618161 gtgtgcaaggtgctcaaccaggtcgggtctccaaatgttacgggcct 2618207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 57498 - 57539
Alignment:
Q  185 caaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    ||||||||||||||||| | | ||||||||||||||||||||    
T  57498 caaggtgctcaaccaggtcggacctccaaatgctacgggcct 57539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 6754001 - 6754058
Alignment:
Q  169 cggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    |||||| |||| ||||||||||| |||| |||| | | ||||||||||||||||||||    
T  6754001 cggccttgaggatgtgcaaggtgttcaatcaggtcggacctccaaatgctacgggcct 6754058  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 29400928 - 29400997
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaac 231  Q
    ||||| |||| || ||||||||||||||||||||| |||  | ||  |||||||||||||||||| ||||    
T  29400928 ccaggcccgggcttgagggtgtgcaaggtgctcaatcagatcgggtttccaaatgctacgggcctctaac 29400997  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 8363960 - 8364031
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||    
T  8363960 caggcccggccttgagggtgtgcaaggtgctcaaccaggccgggcctccaattgctacgggcctctaacgaa 8364031  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 23068002 - 23067930
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||    
T  23068002 ccaggcccggccttgagggtgtgcaaggtgctcaaccaggccgggcctccaattgctacggacctctaacgaa 23067930  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 41707332 - 41707260
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||| || |||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  41707332 ccaggcccagccttgagggtgtgcaaggtgttcaaccaggccgggcctccaaatgctacgggcctctaacgaa 41707260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 27111082 - 27111012
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||||| ||||||||| |||||||||||||||||  |||||||||||||||||||||| |||||||    
T  27111082 caggcccggccttgagggtgtg-aaggtgctcaaccaggcggggcctccaaatgctacgggcctctaacgaa 27111012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 6715245 - 6715310
Alignment:
Q  169 cggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||| ||||||||||||||||||||||||||||  ||||| ||||| ||||||||| |||||||    
T  6715245 cggccttgagggtgtgcaaggtgctcaaccaggccgagcctctaaatgttacgggcctctaacgaa 6715310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 21785059 - 21784988
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||| | |||||||||||||||||| ||||||||| ||||||| ||||||||||| || |||||||    
T  21785059 caggcccggctttgagggtgtgcaaggtgcttaaccaggccgggcctcccaatgctacgggtctctaacgaa 21784988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 28132998 - 28132940
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||||||||||||||||  | ||||| |||||| |||||||||||||||||    
T  28132998 gagggtgtgcaaggtgctcaaccagatcgggccttcaaatgttacgggcctttaacgaa 28132940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 51939831 - 51939763
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaac 231  Q
    |||| ||| ||| |||||||||||||||||||||||||||  ||||||||||| ||| |||||| ||||    
T  51939831 caggcccgaccttgagggtgtgcaaggtgctcaaccaggcggggcctccaaattctatgggcctctaac 51939763  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 24252420 - 24252475
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaac 231  Q
    ||||||||| ||||||||||||||| || |||||||||||| ||||||||| ||||    
T  24252420 gagggtgtgtaaggtgctcaaccagaccgggcctccaaatgttacgggcctctaac 24252475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 29388030 - 29387959
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||| ||||| ||| |||||||||||||||||||||||| | ||| ||||||||||| || | |||||||    
T  29388030 caggtctggccttgagtgtgtgcaaggtgctcaaccaggccggaccttcaaatgctacgagcttctaacgaa 29387959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 46791965 - 46791902
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| |||||||||||||||||| ||| | | | |||||||||||||||||| ||| |||||||    
T  46791965 gccttgagggtgtgcaaggtgcttaactaagtcgggcctccaaatgctacggacctctaacgaa 46791902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 51064289 - 51064360
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||||||  || |||||||||||||||| |||| |||||| ||| ||||||| |||||| ||| |||||||    
T  51064289 caggtccgaacttgagggtgtgcaaggtgttcaatcaggccgggcttccaaatactacggacctctaacgaa 51064360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 52655399 - 52655332
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaac 231  Q
    |||| ||| ||| |||||||||||||||||| ||||||||| ||||| |||||| || |||||| ||||    
T  52655399 caggcccgaccttgagggtgtgcaaggtgcttaaccaggccgggcct-caaatgttatgggcctctaac 52655332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 16500 - 16564
Alignment:
Q  170 ggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  16500 ggccttgagggtgtgcaaggtgctcaaccagaccgggcctccaaatgctacgggcctctaacgaa 16564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 13020209 - 13020281
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||| ||||||| |||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||    
T  13020209 ccaggcccggccttgagggtgtgcaaggtgctcaaccagggcgggcctccaattgctacgggcctctaacgaa 13020281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 45618778 - 45618842
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaagaataa 240  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||    
T  45618778 gagggtgtgcaaggtgctcagccaggccgggcctccaaatgctacgggcctctaacgaaaaataa 45618842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 36481194 - 36481265
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| |||| || |||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  36481194 caggcccggtcttgagggtgtgcaaggtgctcaaccaggccggacctccaaatgctacgggcctctaacgaa 36481265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 4855785 - 4855855
Alignment:
Q  170 ggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaagaataa 240  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||| |||||    
T  4855785 ggccttgagggtgtgcaaggtgctcaaccaggccggacctccaaattctacgggcctctaacgaaaaataa 4855855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 26152023 - 26151945
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaagaataa 240  Q
    ||||| ||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||| || ||||||| |||||    
T  26152023 ccaggcccggccttgagggtgtgcaagatgctcaaccaggtcgggcctccaaatgctacgggtctctaacgaaaaataa 26151945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 25222119 - 25222182
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| |||||| || |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  25222119 gccttgagggtatgaaaggtgctcaaccaggccgggcctccaaatgctacgggcctctaacgaa 25222182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 42760023 - 42759952
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||| |||||||| ||||||||||||| ||| | |||||||||||||||| ||||| |||||||    
T  42760023 caggtccggccttgagggtgtacaaggtgctcaactaggtcgggcctccaaatgctacaggcctctaacgaa 42759952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 19367681 - 19367623
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| || |||||||    
T  19367681 gagggtgtgcaaggtgctcaaccaggtcgggcctccaaatgctacgggtctctaacgaa 19367623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 18676579 - 18676527
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacggg 223  Q
    |||| ||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  18676579 gccttgagagtgtgcaaggtgctcaaccaggccgggcatccaaatgctacggg 18676527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 42411833 - 42411762
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||| | ||||||||||||||||||||| |||||| ||||||||| ||||| | |||| |||||||    
T  42411833 caggcccggcattgagggtgtgcaaggtgctcaatcaggccgggcctccaattgctaagagcctctaacgaa 42411762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 7993422 - 7993479
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctac 220  Q
    |||||||||| | ||||||||||||||||||||| | | || ||||||||||||||||    
T  7993422 caggtccggctttgagggtgtgcaaggtgctcaatctgaccgggcctccaaatgctac 7993479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 6530448 - 6530519
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||| ||||| ||||||||| |||||||||||| || || | |||| ||||| ||||||||| |||||||    
T  6530448 caggtctggccttgagggtgtgtaaggtgctcaacgagaccggacctctaaatgatacgggcctctaacgaa 6530519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 2063616 - 2063660
Alignment:
Q  182 gtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    |||||||||| |||||||| || ||||||||||| ||||||||||    
T  2063616 gtgcaaggtgttcaaccagaccgggcctccaaatactacgggcct 2063660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 48722645 - 48722577
Alignment:
Q  166 gtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||    
T  48722645 gtccggctttgagggtgtgcaaagtgctcaaccaggccgggcctccaaatgctacgggcctctaacgaa 48722577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 51110379 - 51110307
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||| ||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  51110379 ccaggcccgaccttgagggtgtgtaaggtgctcaaccaggccgggcctccaaatgctacgggcctctaacgaa 51110307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 18128215 - 18128144
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  18128215 caggcccggccttgagggtgtgcaaggtgctcaaccaggccgggcctctaaatgctacggacctctaacgaa 18128144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 6150493 - 6150565
Alignment:
Q  162 ccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||| ||| ||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||    
T  6150493 ccaggcccgaccttgagggtgtgcaaggtgctcaatcaggccgggcttccaaatgctacgggcctctaacgaa 6150565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 14084968 - 14084905
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||||||||||||||||||||||| || | |||||||||| |||||||||||||||||    
T  14084968 gccttgagggtgtgcaaggtgctcaaccagaccggacctccaaatgttacgggcctttaacgaa 14084905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 20470524 - 20470587
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| |||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||    
T  20470524 gccttgagggtgtgcaaggtgctcaaccaggccggacctacaaatgctacgggcctctaacgaa 20470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 17487561 - 17487490
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| |||| || ||||||||||||||| |||||||| ||| |||||||||||| ||||||||| |||||||    
T  17487561 caggcccggtcttgagggtgtgcaaggtcctcaaccaagccgggcctccaaatgatacgggcctctaacgaa 17487490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 33124900 - 33124837
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||||||||||||||||||| |||||  |||||||||| ||||||||||| |||||||    
T  33124900 gccttgagggtgtgcaaggtgctcaatcaggctgggcctccaaacgctacgggcctctaacgaa 33124837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 50552299 - 50552353
Alignment:
Q  180 gtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||||||||||||||||||| ||||| |||||||||||| || ||| |||||||    
T  50552299 gtgtgcaaggtgctcaaccagaccaggtctccaaatgctatggacctctaacgaa 50552353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 10109507 - 10109540
Alignment:
Q  164 aggtccggcctcgagggtgtgcaaggtgctcaac 197  Q
    ||||||||||| ||||||||||||||||||||||    
T  10109507 aggtccggccttgagggtgtgcaaggtgctcaac 10109540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 52055357 - 52055394
Alignment:
Q  182 gtgcaaggtgctcaaccaggccaggcctccaaatgcta 219  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  52055357 gtgcaaggtgctcaaccaggccgagcctccaaatgcta 52055394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 42161398 - 42161327
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||| ||| ||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  42161398 caggcccgaccttgagggtgtgcaaggtgctcaaccaggccgagcctccaaatgctacgggcctctaacgaa 42161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 38524986 - 38525044
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||    
T  38524986 gagggtgtgcaaggtgctcaaccaggccgggcctccaaatgctacggacctctaacgaa 38525044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 8358565 - 8358501
Alignment:
Q  167 tccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaac 231  Q
    |||||| | |||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  8358565 tccggctttgagggtgtgcaaggtgctcatccaggccgggcctccaaatgctacgggcctctaac 8358501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 33909870 - 33909918
Alignment:
Q  178 gggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33909870 gggtgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcct 33909918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 27432381 - 27432452
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||| ||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  27432381 caggcccgaccttgagggtgtgtaaggtgctcaaccaggcccggccttcaaatgctacgggcctctaacgaa 27432452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 46221965 - 46221907
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||    
T  46221965 gagggtgtgcaaggtgctcaactaggccgggcctccaaatgctacggacctctaacgaa 46221907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 18015839 - 18015785
Alignment:
Q  180 gtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||||| |||||||    
T  18015839 gtgtgcaagatgctcaaccaggccgggcctccaaatgttacgggcctctaacgaa 18015785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 36796645 - 36796569
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaagaataa 240  Q
    |||| ||| ||| |||| ||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||    
T  36796645 caggcccgaccttgaggctgtgcaaggtgctcaaccaggcc-ggcctccaaatactacggacctctaacgaaaaataa 36796569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 33419392 - 33419321
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||||||||||||| ||| |||||||||||||||| || ||||||||  ||||| ||| |||||||    
T  33419392 caggcccggcctcgagggtgagcatggtgctcaaccaggccgggtctccaaatattacggtcctctaacgaa 33419321  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 4099741 - 4099795
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgc 217  Q
    |||| ||||||| ||||||||||||||||||||||||| |  |||||||||||||    
T  4099741 caggcccggccttgagggtgtgcaaggtgctcaaccagactgggcctccaaatgc 4099795  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 12251657 - 12251600
Alignment:
Q  169 cggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    |||||| ||||||||||||||| ||||| |||||| | ||||||||||||||| ||||    
T  12251657 cggccttgagggtgtgcaaggtactcaatcaggccggacctccaaatgctacgagcct 12251600  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 44877069 - 44877006
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    |||| ||||||| ||||| ||||||||||||| || ||||| ||||| |||||| |||||||||    
T  44877069 caggcccggccttgagggagtgcaaggtgctctactaggccgggccttcaaatgttacgggcct 44877006  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 11672389 - 11672427
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccagg 201  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  11672389 caggcccggccttgagggtgtgcaaggtgctcaaccagg 11672427  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 39372924 - 39372866
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||    
T  39372924 gagggtgtgcaaggtgctcaaccaggccggacctccaaattctacgggcctttaacgaa 39372866  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 53011512 - 53011574
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  53011512 gccttgagggtgtgcaaggtgctcaaccagacc-ggcctccaaatgctacgggcctctaacgaa 53011574  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 11682006 - 11681948
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||||    
T  11682006 gagggtgtgcaaggtgctcaaccaggccgggccttcaaatgctacgagcctctaacgaa 11681948  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 11690285 - 11690227
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||||    
T  11690285 gagggtgtgcaaggtgctcaaccaggccgggccttcaaatgctacgagcctctaacgaa 11690227  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 21168845 - 21168916
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||||| |||||||    
T  21168845 caggcccggccttgagggtatgcaaggtgctcaaccaggccggatctccaaatgatacgggcctctaacgaa 21168916  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 27632203 - 27632253
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  27632203 gagggagtgcaaggtgctcaactaggccgggcctccaaatgctacgggcct 27632253  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 41038042 - 41038096
Alignment:
Q  168 ccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgg 222  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||| |||||    
T  41038042 ccggccttgagggtgtgcaagatgctcaaccaggccgggcctccaaatgatacgg 41038096  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 28463848 - 28463793
Alignment:
Q  179 ggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||||||||||| |||| |||||| | |||||||||||||||||||| |||||||    
T  28463848 ggtgtgcaaggtgttcaatcaggccggacctccaaatgctacgggcctctaacgaa 28463793  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 44477825 - 44477904
Alignment:
Q  161 gccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaagaataa 240  Q
    |||||| ||||||| ||||||||| |||||| ||||||||| | |||||||||||  ||||| ||| ||||||| |||||    
T  44477825 gccaggcccggccttgagggtgtgtaaggtgttcaaccaggtcgggcctccaaatattacggacctctaacgaaaaataa 44477904  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 32131065 - 32131007
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacg 221  Q
    |||| ||||||| ||||||||| |||||| ||||||||||  |||||||||||||||||    
T  32131065 caggcccggccttgagggtgtgtaaggtgttcaaccaggctgggcctccaaatgctacg 32131007  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 19661177 - 19661239
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| |||||||||||||||||||||||||| | ||||| ||||||||| ||| || |||||||    
T  19661177 gccttgagggtgtgcaaggtgctcaaccagg-cgggccttcaaatgctatgggtctctaacgaa 19661239  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 23256396 - 23256454
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||||||||||||||||||| ||||||   |||||||||| || ||| ||||||||||    
T  23256396 gagggtgtgcaaggtgctcaatcaggccgaacctccaaatgttatgggtctttaacgaa 23256454  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 13423657 - 13423720
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| |||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||||    
T  13423657 gccttgagggtgtgcaaggtgctcaaccaggcggggcctccaaatgttacgggcctctaacgaa 13423720  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 8398780 - 8398838
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||  |||||||    
T  8398780 gagggtgtgcaaggtgctcaatcaggccggacctccaaatgctacgggcccctaacgaa 8398838  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 36718830 - 36718766
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaagaataa 240  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||||||||| || ||||||| |||||    
T  36718830 gaggatgtgcaaggtgctcaactaggccgggcctccgaatgctacgggtctctaacgaaaaataa 36718766  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 26378052 - 26377981
Alignment:
Q  163 caggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| |||| || |||||||||||||||||||||||||| | ||||| ||||| ||||||| || |||||||    
T  26378052 caggaccggtcttgagggtgtgcaaggtgctcaaccaggtcgggccttcaaattctacgggtctctaacgaa 26377981  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 12661105 - 12661151
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgg 222  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||    
T  12661105 gagggtgtgcaaggtgctcaaccagatcgggcctccaaatgctacgg 12661151  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 13474429 - 13474487
Alignment:
Q  176 gagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||||||||||||| ||||||||  || ||||||||| || ||||||||||||||    
T  13474429 gagggtgtgcaaggtgcttaaccaggctgggtctccaaatgttatgggcctttaacgaa 13474487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 19099572 - 19099528
Alignment:
Q  182 gtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcct 226  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||    
T  19099572 gtgcaaggtgctcaaccaggtcgggcctccaaatactacgggcct 19099528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 10591531 - 10591468
Alignment:
Q  161 gccaggtccggcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggc 224  Q
    |||||| ||||||| ||||| ||||||||||||||| || ||| |||||||||| |||| ||||    
T  10591531 gccaggcccggccttgagggagtgcaaggtgctcaatcaagccgggcctccaaaagctatgggc 10591468  T

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Target: scaffold0181 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 18229 - 18166
Alignment:
Q  171 gcctcgagggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||| ||||||||| |||||| |||| |||||| |||||||||||| || ||||||||||||||    
T  18229 gccttgagggtgtgaaaggtgttcaatcaggccgggcctccaaatgttatgggcctttaacgaa 18166  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 23026 - 22969
Alignment:
Q  177 agggtgtgcaaggtgctcaaccaggccaggcctccaaatgctacgggcctttaacgaa 234  Q
    |||||||| |||||||||||||||||| | |||||||||| |||||| || |||||||    
T  23026 agggtgtgtaaggtgctcaaccaggccggacctccaaatgatacgggtctctaacgaa 22969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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