View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1303_low_3 (Length: 553)
Name: NF1303_low_3
Description: NF1303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1303_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 61 - 478
Target Start/End: Complemental strand, 23420496 - 23420081
Alignment:
| Q |
61 |
gggtgttgaaaaataatgcccgagagagagagtacgtctgtggtgctgctcaaacaagatagacggttaactaatagcagtttgcaggacatgcatctca |
160 |
Q |
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| T |
23420496 |
gggtgttgaaaaataatgcccgagagagag--tacgtttgtgtggttgcgcaaacaagatagacggttaagtaatagcagattgcaagtcatgcatctca |
23420399 |
T |
|
| Q |
161 |
gaactgcatacactgaatagatactatcgaaacgacattgcatgttcttcgcgattgtcccatatcaatggttgtttgcttaagaccgttaaatctagat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23420398 |
gaactgcatacactgaatagatactatcgaaacgacattgcatgttcttcgcgattgtcccatatcaatggttgtttgcttaagaccgttaattctagat |
23420299 |
T |
|
| Q |
261 |
atcataaggaacttttcaacgcacatttgcagcaatggttggagatgagtatggatacggcattgagtgagcgggaggtctgaaatcggactggcttttg |
360 |
Q |
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| T |
23420298 |
atcataaggaacttttcaacgcagatttgcagcaatggttggagatgagtatggatacggcgttgagtgagcgggaggtctgaaatcggactggcttttg |
23420199 |
T |
|
| Q |
361 |
ggagacgacatgtcatactttgtggaattggaggaacagaatgatgcatgatgaggattttgtgtcacctagtaatccttggttggaaattaacaggctt |
460 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23420198 |
ggagacgacatgtcatacgttgtggaattggaggaacagaacgatgcatgatgaggattttgtgtcacctagtaatccttgactggaaattaacaggctt |
23420099 |
T |
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| Q |
461 |
gttaattgtctcgtggct |
478 |
Q |
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| T |
23420098 |
gttaattgtctcgtggct |
23420081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 108 - 470
Target Start/End: Original strand, 23882840 - 23883209
Alignment:
| Q |
108 |
gctcaaacaagatagacggttaactaatagcagtttgcaggacatgcatctcagaactgcatac-------actgaatagatactatcgaaacgacattg |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| || |||| |
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| T |
23882840 |
gctcaaacaagatggacggttaactaatagcagtttgcaggacatgcatctcagaactgcgtactgtcatcacttaatagatactatcgaaaggatattg |
23882939 |
T |
|
| Q |
201 |
catgttcttcgcgattgtcccatatcaatggttgtttgcttaagaccgttaaatctagatatcataaggaacttttcaacgcacatttgcagcaatggtt |
300 |
Q |
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| T |
23882940 |
catgttcttcgcgattatcccatagcaatggttgtttgcttaggactgttaattttagatatcacaaggaacttttcaacgcagatttgcagcaatggtt |
23883039 |
T |
|
| Q |
301 |
ggagatgagtatggatacggcattgagtgagcgggaggtctgaaatcggactggcttttgggagacgacatgtcatactttgtggaattggaggaacaga |
400 |
Q |
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| T |
23883040 |
ggatatgagtatggatatagtgttgagtgaggggaagacccgaaattggactggtttttgggctaaggcatgtcatacttcgtggaattggaggaacaga |
23883139 |
T |
|
| Q |
401 |
atgatgcatgatgaggattttgtgtcacctagtaatccttggttggaaattaacaggcttgttaattgtc |
470 |
Q |
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| T |
23883140 |
aggatgcatgatgaggattttgtgtcacctagtaatccttggctggaaattagcaggcttgttaattgtc |
23883209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 23422349 - 23422274
Alignment:
| Q |
367 |
gacatgtcatactttgtggaattggaggaacagaatgatgcatgatgaggattttgtgtcacctagtaatccttgg |
442 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
23422349 |
gacatgtcatactttgtggaattgaaggaacaaaatgatgcatgatgaggatattgtgtcgcctagtaatccttgg |
23422274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 23876616 - 23876677
Alignment:
| Q |
171 |
cactgaatagatactatcgaaacgacattgcatgttcttcgcgattgtcccatatcaatggt |
232 |
Q |
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||||| ||||| |||||| |||||||||||||||||||||||| ||||| | || ||||||| |
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| T |
23876616 |
cactgtatagaaactatcaaaacgacattgcatgttcttcgcggttgtctcttagcaatggt |
23876677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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