View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1303_low_5 (Length: 506)
Name: NF1303_low_5
Description: NF1303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1303_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 56 - 406
Target Start/End: Complemental strand, 24256646 - 24256296
Alignment:
| Q |
56 |
agatttggtcaagagagagcaaactttacatcaaagaaaagattagaaacttatacaacaagtattcttatttatatgtctggaattgatttatctcata |
155 |
Q |
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| T |
24256646 |
agatttgggaaagagagagaaaactttacttcaaagaagagattagaaacgtatacagtaagtattcttatttatatgtctggaattgatttatctcata |
24256547 |
T |
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| Q |
156 |
ataagttaaatggtagcatcccatctgagctaggaaacttgacaaaaattcgagcgttgaacttgtccaacaattttttaactgggagtgttccagctac |
255 |
Q |
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| T |
24256546 |
ataagttaaatggtagcatcccatatgaactaggaaacttgacaagaattcgagcattgaacttgtccaacaatcttttaactgggaaagttccagcaac |
24256447 |
T |
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| Q |
256 |
attctcaaatttggtacaggttgagagtttagatctttctttgaacatgttgagtggccgaattcctcctcagctaactggactgcactcccttgaagta |
355 |
Q |
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| T |
24256446 |
attctccaatttggtacaggttgagagtttagatctttctttcaacatgttgagtggccaaattcctcctcagctaagtggattgcactaccttgaagta |
24256347 |
T |
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| Q |
356 |
ttcagtgtggcacacaacaatttatcaggtgcaacacctgaaaggaaagga |
406 |
Q |
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| T |
24256346 |
tttagtgtggcgcacaacaatttatctggtgcaacacctgaatggaaagga |
24256296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 73 - 406
Target Start/End: Complemental strand, 24241817 - 24241484
Alignment:
| Q |
73 |
agcaaactttacatcaaagaaaagattagaaacttatacaacaagtattcttatttatatgtctggaattgatttatctcataataagttaaatggtagc |
172 |
Q |
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| T |
24241817 |
agcaacctttacttcaaagaaaaggtcagaaacttatacaacaaatgtgcttatttatatgtctggaattgacttgtctcacaataaattaaatggaagt |
24241718 |
T |
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| Q |
173 |
atcccatctgagctaggaaacttgacaaaaattcgagcgttgaacttgtccaacaattttttaactgggagtgttccagctacattctcaaatttggtac |
272 |
Q |
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|| ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||| || || | |||||||||||||||| ||||||||| |
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| T |
24241717 |
attccatctgagcttggaaacttgacaagaattcgagcattgaacttgtccaacaactttttcaccggaaaaattccagctacattctctgatttggtac |
24241618 |
T |
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| Q |
273 |
aggttgagagtttagatctttctttgaacatgttgagtggccgaattcctcctcagctaactggactgcactcccttgaagtattcagtgtggcacacaa |
372 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||| |||||||||||||| |
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| T |
24241617 |
aggttgagagtttagatctttctttcaacatgttgagtggccaaattcctcctcggctaagtggattgcactaccttgaagtatttagtgtggcacacaa |
24241518 |
T |
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| Q |
373 |
caatttatcaggtgcaacacctgaaaggaaagga |
406 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
24241517 |
caatttatcaggtgcaacacctgaaatgaaagga |
24241484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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