View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1303_low_9 (Length: 364)
Name: NF1303_low_9
Description: NF1303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1303_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 9063805 - 9064091
Alignment:
| Q |
1 |
ttattaatgaagcctcaaaaaatggtttggctttaccatatacaccatattggtatggtttaacaataggtggaatgatcggaactggtgctcatggaag |
100 |
Q |
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| T |
9063805 |
ttattaatgaagcctcaaaaaatggtttggctttaccatatacaccatattggtatggtttaacaataggtggaatgatcggaactggtgctcatggaag |
9063904 |
T |
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| Q |
101 |
cacattgtcggggaaaggaagtgcggttcatgactatgttgtcgagataaggatcgttaggccttcggattctgacgatggatatgctaaagttgagatt |
200 |
Q |
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| T |
9063905 |
cacattgtcggggaaaggaagtgcggttcatgactatgttgtcgagataaggatcgttaggccttcggattctgacgatggatatgctaaagttgagatt |
9064004 |
T |
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| Q |
201 |
cttaatgaacaaaacaatgaagattttaatgcagctaaagtatcacttggtgtgcttggtgttatttcacaggtatgttgttagaaa |
287 |
Q |
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| T |
9064005 |
cttaatgaacaaaacaatgaagattttaatgcagctaaagtatcacttggtgtgcttggtgttatttcacaggtatgttgttagaaa |
9064091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 89 - 275
Target Start/End: Original strand, 9057769 - 9057955
Alignment:
| Q |
89 |
tgctcatggaagcacattgtcggggaaaggaagtgcggttcatgactatgttgtcgagataaggatcgttaggccttcggattctgacgatggatatgct |
188 |
Q |
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| T |
9057769 |
tgctcatggaagcacattgtgggggaaaggaagttatgttcatgattatgttgtggagataaggattgttagaccttcagattatgaagatggatatgct |
9057868 |
T |
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| Q |
189 |
aaagttgagattcttaatgaacaaaacaatgaagattttaatgcagctaaagtatcacttggtgtgcttggtgttatttcacaggta |
275 |
Q |
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| T |
9057869 |
aaagttgatattcttaatgaacaaaacaatgaagattttaatgcagttaaagtatcacttggtgtgcttggtgttatttcacaggta |
9057955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 493789 - 493690
Alignment:
| Q |
40 |
atacaccatattggtatggtttaacaataggtggaatgatcggaactggtgctcatggaagcacattgtcggggaaaggaagtgcggttcatgactatgt |
139 |
Q |
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| T |
493789 |
atacaccatattggtggggtttaaccattggtggcctaattagcactggtgcacatggaagtacattgtggggtaaaggaagtgctgttcatgagtatgt |
493690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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