View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304-Insertion-2 (Length: 590)
Name: NF1304-Insertion-2
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 53480246 - 53479895
Alignment:
| Q |
8 |
atttctaacaaagcaaataaaaagacaaaaactacaaacaccgaaaccaccaaactcttccatctaacacacactttatccaacttaactcaacgaattt |
107 |
Q |
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| T |
53480246 |
atttctaacaaagcaaataaaaagacaaaaactacaaacaccgaaaccaccaaactcttccatctaacacacactttatccaacttaactcaacgaattt |
53480147 |
T |
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| Q |
108 |
tatgagaaccctccctccccataaaagtggtataaatagttactcgattttagaatggtaactgaaagagctctaaagagagtacatcagtaacacaaaa |
207 |
Q |
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| T |
53480146 |
tatgagaaccctccctccccataaaagtggtttaaatagttactcaattttaaaatggtaactgaaagagctctaaagagagtacattagtaacacaaaa |
53480047 |
T |
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| Q |
208 |
taacagcttcgagaaaaatgagacgagctcctgtggataaattgtgaaacttccgcatataaaatttccctaaaattctatcaatcacacggttaaaaat |
307 |
Q |
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| T |
53480046 |
tagaagcttcgagaaaaatgagacgagctcctgtggataaattgtgaaacttccgcatataaaatttccctaaaattctatcaatcacacggttaaaaat |
53479947 |
T |
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| Q |
308 |
tgacagcctacttggattatctccaattgacgaacacaaatacttaaatggg |
359 |
Q |
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| T |
53479946 |
tgacagcctacttggattatctccaattgacaaacacaaatacttaaatggg |
53479895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 367 - 555
Target Start/End: Complemental strand, 53479775 - 53479587
Alignment:
| Q |
367 |
ctcttttcacatagcagcaacgtgtcatcagcaaactctaataggaaaattctaaacattactaatttgaaaatccttatacacctaaaatttgaggatg |
466 |
Q |
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| T |
53479775 |
ctcttttctcatagcagcaacgtgccatcagcaaactctaaaaggaaaattctaaacattactaatttgaaaatccttatacacctaaaatttgaggatg |
53479676 |
T |
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| Q |
467 |
cacgaatcaaagaattaaatctttcaatggctaataaaaacaagatatatagaagacaaatgatctccttgccttaactcccaagcatt |
555 |
Q |
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| T |
53479675 |
cacgaatcaaagaattaaatctttcaatggctaataaaaacaagatatatagaagacaaatgatctccttgccttaactctcaagcatt |
53479587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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