View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304-Insertion-3 (Length: 505)

Name: NF1304-Insertion-3
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304-Insertion-3
NF1304-Insertion-3
[»] chr6 (8 HSPs)
chr6 (7-69)||(5185076-5185138)
chr6 (6-52)||(5443943-5443989)
chr6 (6-52)||(5107999-5108045)
chr6 (8-52)||(5429438-5429482)
chr6 (6-44)||(5092785-5092823)
chr6 (6-44)||(5160717-5160755)
chr6 (6-52)||(5422042-5422088)
chr6 (19-63)||(5394172-5394216)


Alignment Details
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 5185076 - 5185138
Alignment:
Q  7 acgagtatctttccctctaaaacttaagaacacgtcatggatccttactagttccggcctact 69  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5185076 acgagtatcttcccctctaaaacttaagaacacatcatggatccttactagttccggtctact 5185138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 5443989 - 5443943
Alignment:
Q  6 cacgagtatctttccctctaaaacttaagaacacgtcatggatcctt 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5443989 cacgagtatctttccctctaaaacttaagaacacgtcatggatcctt 5443943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 5107999 - 5108045
Alignment:
Q  6 cacgagtatctttccctctaaaacttaagaacacgtcatggatcctt 52  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  5107999 cacgagtatctttgcctctgaaacttaggaacacgtcatggatcctt 5108045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 5429482 - 5429438
Alignment:
Q  8 cgagtatctttccctctaaaacttaagaacacgtcatggatcctt 52  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||    
T  5429482 cgagtatcttcgcctctaaaacttaggaacacgtcatggatcctt 5429438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 5092823 - 5092785
Alignment:
Q  6 cacgagtatctttccctctaaaacttaagaacacgtcat 44  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  5092823 cacgagtatcttttcctctaaaacttaagaacacttcat 5092785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 5160717 - 5160755
Alignment:
Q  6 cacgagtatctttccctctaaaacttaagaacacgtcat 44  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  5160717 cacgagtatcttttcctctaaaacttaagaacacttcat 5160755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 5422088 - 5422042
Alignment:
Q  6 cacgagtatctttccctctaaaacttaagaacacgtcatggatcctt 52  Q
    |||||||||| |  |||||||||||||||||||| ||||||||||||    
T  5422088 cacgagtatcctctcctctaaaacttaagaacacatcatggatcctt 5422042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5394216 - 5394172
Alignment:
Q  19 ccctctaaaacttaagaacacgtcatggatccttactagttccgg 63  Q
    |||||| ||||||||||||||||| || ||||||||| |||||||    
T  5394216 ccctctgaaacttaagaacacgtcgtgaatccttactcgttccgg 5394172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University