View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_high_17 (Length: 575)

Name: NF13040_high_17
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_high_17
NF13040_high_17
[»] chr2 (16 HSPs)
chr2 (17-414)||(23853583-23853980)
chr2 (478-575)||(23853422-23853519)
chr2 (311-413)||(19577774-19577875)
chr2 (334-414)||(28603933-28604013)
chr2 (334-414)||(44630617-44630697)
chr2 (169-249)||(31327431-31327511)
chr2 (169-249)||(31334152-31334232)
chr2 (303-402)||(38592056-38592155)
chr2 (169-237)||(42926006-42926074)
chr2 (329-414)||(15446452-15446537)
chr2 (177-246)||(28603786-28603855)
chr2 (350-414)||(31328925-31328989)
chr2 (350-414)||(31335646-31335710)
chr2 (285-413)||(40846751-40846879)
chr2 (64-101)||(31327325-31327362)
chr2 (285-402)||(32080175-32080292)
[»] chr8 (3 HSPs)
chr8 (169-411)||(7002328-7002571)
chr8 (169-414)||(22714166-22714412)
chr8 (332-413)||(1910117-1910198)
[»] chr4 (11 HSPs)
chr4 (300-414)||(16948814-16948928)
chr4 (169-265)||(8029663-8029759)
chr4 (334-414)||(19102813-19102893)
chr4 (286-413)||(33468166-33468292)
chr4 (169-304)||(19102659-19102794)
chr4 (285-413)||(39216267-39216395)
chr4 (334-414)||(47244977-47245057)
chr4 (334-413)||(12875251-12875330)
chr4 (300-403)||(16955137-16955240)
chr4 (169-248)||(19107289-19107368)
chr4 (286-413)||(29349376-29349502)
[»] chr7 (10 HSPs)
chr7 (329-413)||(15973566-15973650)
chr7 (177-248)||(13313625-13313696)
chr7 (334-414)||(13313484-13313564)
chr7 (169-248)||(26286482-26286561)
chr7 (334-414)||(10674447-10674527)
chr7 (286-413)||(10387520-10387647)
chr7 (286-413)||(10392259-10392386)
chr7 (109-147)||(11289485-11289523)
chr7 (169-238)||(30258781-30258850)
chr7 (334-414)||(4580306-4580386)
[»] chr3 (8 HSPs)
chr3 (334-414)||(29351074-29351154)
chr3 (109-237)||(13155950-13156079)
chr3 (110-237)||(12566031-12566159)
chr3 (110-237)||(13260434-13260562)
chr3 (174-246)||(29350924-29350996)
chr3 (285-395)||(20508427-20508537)
chr3 (169-270)||(2207115-2207216)
chr3 (334-414)||(3656429-3656508)
[»] chr5 (9 HSPs)
chr5 (64-232)||(23688669-23688835)
chr5 (176-289)||(4872586-4872699)
chr5 (305-378)||(17162675-17162748)
chr5 (334-414)||(9725935-9726015)
chr5 (326-378)||(17159215-17159267)
chr5 (109-248)||(25688987-25689127)
chr5 (330-412)||(22832689-22832771)
chr5 (342-414)||(4872742-4872814)
chr5 (334-414)||(35679067-35679147)
[»] chr6 (6 HSPs)
chr6 (334-414)||(19674620-19674700)
chr6 (286-413)||(11428766-11428893)
chr6 (334-414)||(12689819-12689899)
chr6 (169-248)||(12689664-12689743)
chr6 (64-100)||(2862978-2863014)
chr6 (64-100)||(2882282-2882318)
[»] chr1 (7 HSPs)
chr1 (359-414)||(12260848-12260903)
chr1 (176-304)||(16036305-16036434)
chr1 (169-270)||(23192142-23192243)
chr1 (346-413)||(5283443-5283510)
chr1 (334-413)||(16036453-16036532)
chr1 (174-265)||(40166647-40166738)
chr1 (169-247)||(39587697-39587775)
[»] scaffold0002 (1 HSPs)
scaffold0002 (109-237)||(150909-151038)
[»] scaffold0054 (2 HSPs)
scaffold0054 (169-248)||(26134-26213)
scaffold0054 (334-414)||(26288-26368)
[»] scaffold0009 (1 HSPs)
scaffold0009 (169-237)||(147740-147808)


Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 23853980 - 23853583
Alignment:
Q  17 gactatagtcttaagaacactcttaaatttgatgtggcnnnnnnngaagattaagagaagaaagacttgttaacacaagtcaaaannnnnnnagagagaa 116  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  23853980 gactatagtcttaagaacactcttaaatttgatgtggcaaaaaaagaagattaagagaagaaagacttgttaacacaagtcaaaaggggggaagagagaa 23853881  T
Q  117 gaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactagctagctatccttttataggaagagtttataactaatacagagaaacttag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853880 gaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactagctagctatccttttataggaagagtttataactaatacagagaaacttag 23853781  T
Q  217 aaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatcggacaagctaaaaagaaataaactcacaaaagtggaagaac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853780 aaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatcggacaagctaaaaagaaataaactcacaaaagtggaagaac 23853681  T
Q  317 caaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853680 caaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 23853583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 478 - 575
Target Start/End: Complemental strand, 23853519 - 23853422
Alignment:
Q  478 tatgttccatttcatgtgggaccccacactcaattgtttttcaatttaataactaaagttcaattacatagataccaataaaataaggtaagaagaag 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853519 tatgttccatttcatgtgggaccccacactcaattgtttttcaatttaataactaaagttcaattacatagataccaataaaataaggtaagaagaag 23853422  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 19577875 - 19577774
Alignment:
Q  311 aagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtga 410  Q
    ||||| |||| ||| || |||||||||||| |||||||| ||||||| ||||||| |||||||||||| || |||| | ||||||||||||| |||||||    
T  19577875 aagaaacaaactaattggatatgaatgaaggaaatatagaaaactca-ttggattctcaatcttatcaaaatcaacgtgaactaaaattatgcgaagtga 19577777  T
Q  411 tat 413  Q
    |||    
T  19577776 tat 19577774  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 28603933 - 28604013
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| |||||||| ||| ||||||| |||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  28603933 aatgaaggaaagataggaaattcagttggattctcaatcttatcataacgaacataacctaaaattatgggaagtgatatc 28604013  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 44630697 - 44630617
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| |||| ||| ||| |||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  44630697 aatgaaggaaagatagaaaattcagttggattttcaatcttatcacaacaaacataacctaaaattatgagaagtgatatc 44630617  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 31327431 - 31327511
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccat 249  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | |||||||||    
T  31327431 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccat 31327511  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 31334152 - 31334232
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccat 249  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | |||||||||    
T  31334152 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccat 31334232  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 402
Target Start/End: Original strand, 38592056 - 38592155
Alignment:
Q  303 aaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatg 402  Q
    |||| |||| ||| |||| ||| |||||||||||| || |||||||||| |||||||| |||  |||||||||||| || ||||||||  ||||||||||    
T  38592056 aaaaatggaggaaacaaactaaatgaatatgaatggaggaaatataggatactcaattagatactcaatcttatcacaatcaacataagttaaaattatg 38592155  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 42926074 - 42926006
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaat 237  Q
    |||| |||||||||||| ||||||| ||||||||  ||||||| |||  ||||||||||||||||||||    
T  42926074 agctctccttttatagggagagtttgtaactaatttagagaaatttaagaattaagtaaacttaaaaat 42926006  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 15446537 - 15446452
Alignment:
Q  329 atatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    |||||||||||| ||  ||| |||||||| || |||| ||||||||||||  | | |||||| ||||||||||| |||||||||||    
T  15446537 atatgaatgaaggaacgataagaaactcagttcgattctcaatcttatcacgacctacataagctaaaattatgtgaagtgatatc 15446452  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 28603786 - 28603855
Alignment:
Q  177 ttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacc 246  Q
    ||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||    
T  28603786 ttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacc 28603855  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 31328925 - 31328989
Alignment:
Q  350 gaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    |||| ||| ||||||| |||||||||||| ||  ||||||| |||||||| ||||||||||||||    
T  31328925 gaaattcagttggattctcaatcttatcacaacaaacataacctaaaattgtgagaagtgatatc 31328989  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 31335646 - 31335710
Alignment:
Q  350 gaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    |||| ||| ||||||| |||||||||||| ||  ||||||| |||||||| ||||||||||||||    
T  31335646 gaaattcagttggattctcaatcttatcacaacaaacataacctaaaattgtgagaagtgatatc 31335710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 413
Target Start/End: Complemental strand, 40846879 - 40846751
Alignment:
Q  285 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 384  Q
    ||||||||| |||  |||||||||||| ||| |||| | | | ||| ||||||||| ||| ||| |||| ||||||| ||| | | |||||||| || ||    
T  40846879 aaaaagaaacaaatccacaaaagtggaggaaacaaactcattaaatttgaatgaaggaaagataagaaattcaattgaattcttattcttatcacaacca 40846780  T
Q  385 acataaactaaaattatgagaagtgatat 413  Q
     ||||||||||| ||||  ||||||||||    
T  40846779 tcataaactaaatttataggaagtgatat 40846751  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 31327325 - 31327362
Alignment:
Q  64 agattaagagaagaaagacttgttaacacaagtcaaaa 101  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  31327325 agatgaagagaagaaagacttgtcaacacaagtcaaaa 31327362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 32080175 - 32080292
Alignment:
Q  285 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 384  Q
    ||||| ||| |||| |||||||| ||||||| ||||  || || |||||||||||  | | ||| |||| |||| |||||| |||||||||||| || ||    
T  32080175 aaaaataaacaaacccacaaaaggggaagaaacaaacaaattggatatgaatgaatgagagataagaaaatcaaatggattctcaatcttatcacaacca 32080274  T
Q  385 acataaactaaaattatg 402  Q
    || ||| | |||||||||    
T  32080275 acgtaagcaaaaattatg 32080292  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 169 - 411
Target Start/End: Original strand, 7002328 - 7002571
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 268  Q
    |||| |||||||||||  | ||||| ||| ||||   ||||||||||  |||||||||||||||||||| | ||||||||   |||| || |||||| ||    
T  7002328 agctctccttttatagagatagtttgtaaataatttggagaaacttaataattaagtaaacttaaaaattacgcaacccacaaatcagctcaagtaacaa 7002427  T
Q  269 acggatcggacaag-ctaaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggatttt 367  Q
    ||| ||| || |||  |||||||||| |||| |||||||||||||  |  | ||||| |  |||||||||||||||| |||| ||||| | |||||||      
T  7002428 acgaatcagataagtttaaaaagaaagaaacccacaaaagtggaatgaatagattaatttgatatgaatgaagaaaagatagaaaactgagttggattca 7002527  T
Q  368 caatcttatcataaacaacataaactaaaattatgagaagtgat 411  Q
     ||||||| || || ||||| ||||||||||||||  |||||||    
T  7002528 aaatcttaacacaaccaacacaaactaaaattatggaaagtgat 7002571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 414
Target Start/End: Complemental strand, 22714412 - 22714166
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 268  Q
    |||| ||||||||||||  |||||| ||| ||||   ||||||||||  ||||||||||||||| |||| | ||||||||  ||||| || |||||| ||    
T  22714412 agctctccttttatagggggagtttgtaaataatttggagaaacttaagaattaagtaaacttagaaattaagcaacccacagatcagctcaagtaacaa 22714313  T
Q  269 acggatcggacaagct-aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggatttt 367  Q
    ||  |||| | ||||| ||||||||| |||| || |||| | || ||| |||| | | ||||||||||||||  ||  | | |||||||||||| ||| |    
T  22714312 actaatcgcataagctaaaaaagaaacaaacccaaaaaattagatgaaacaaactcattgaatatgaatgaaagaatgacaagaaactcaattgaattct 22714213  T
Q  368 caatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
     | |||||||| |  |||||||| ||||| ||||| |||||||||||    
T  22714212 tattcttatcacagccaacataagctaaatttatgggaagtgatatc 22714166  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 1910198 - 1910117
Alignment:
Q  332 tgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 413  Q
    ||||||||| ||||||| |||| ||||||  ||| | | |||||||| || || |||||| |||| ||||||||||||||||    
T  1910198 tgaatgaaggaaatataagaaattcaattaaattcttattcttatcacaaccaccataaattaaatttatgagaagtgatat 1910117  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 16948814 - 16948928
Alignment:
Q  300 cacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaatt 399  Q
    |||||||||| | ||| |||| ||| || ||||| |||||| | |||||||||||||| || |||| ||||||||||||||| |||||||| ||||||||    
T  16948814 cacaaaagtgaatgaaacaaactaattggatatggatgaaggagatataggaaactcagttcgattctcaatcttatcataaccaacataagctaaaatt 16948913  T
Q  400 atgagaagtgatatc 414  Q
    ||| ||| |||||||    
T  16948914 atgggaaatgatatc 16948928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 8029759 - 8029663
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaa 265  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||||  ||||| || ||||||    
T  8029759 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaa 8029663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 19102813 - 19102893
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| |||| ||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  19102813 aatgaaggaaagatagaaaattcagttggattctcaatcttatcacaacaaacataacctaaaattatgagaagtgatatc 19102893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 413
Target Start/End: Complemental strand, 33468292 - 33468166
Alignment:
Q  286 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 385  Q
    |||||||| |||  |||||||||||| ||| |||| ||  ||||| ||||||||| ||||||| |||| ||||||  ||| | | ||||||||||| ||     
T  33468292 aaaagaaacaaatccacaaaagtggaggaaacaaactat-tgaatttgaatgaaggaaatataagaaattcaattaaattcttattcttatcataaccac 33468194  T
Q  386 cataaactaaaattatgagaagtgatat 413  Q
    ||||| ||||| ||||| ||||||||||    
T  33468193 cataagctaaatttatgggaagtgatat 33468166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 19102659 - 19102794
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 268  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||| ||||||||||||||| | ||||||||   |||| || |||||| ||    
T  19102659 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaatt-agtaaacttaaaaattaagcaacccacatatcagctcaagtaacaa 19102757  T
Q  269 acggatcggacaagct-aaaaagaaataaactcacaa 304  Q
    ||| || ||| ||| | ||||||||| |||| |||||    
T  19102758 acgaataggataagttcaaaaagaaacaaacccacaa 19102794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 413
Target Start/End: Complemental strand, 39216395 - 39216267
Alignment:
Q  285 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 384  Q
    ||||||||| |||  |||||||||| | ||| |||| | | ||||||||||  ||| ||| |||| ||||||||||| ||| | | |||||||| || ||    
T  39216395 aaaaagaaacaaatccacaaaagtgtaggaaacaaactcattgaatatgaaccaaggaaagatagaaaactcaattgaattcttattcttatcacaacca 39216296  T
Q  385 acataaactaaaattatgagaagtgatat 413  Q
    ||||||  |||| ||||| ||||||||||    
T  39216295 acataagataaatttatgcgaagtgatat 39216267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 47244977 - 47245057
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| || ||||||||| ||| ||||||| |||||| ||||| ||  ||||||| ||||||||||| ||| |||||||    
T  47244977 aatgaaggaagtataggaaattcagttggattctcaatcatatcacaacaaacataacctaaaattatgggaaatgatatc 47245057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 12875251 - 12875330
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 413  Q
    ||||||| ||| |||||||| |||  || ||| ||||| |||||| || |||||||| ||||||||||| ||||||||||    
T  12875251 aatgaaggaaagataggaaattcagctgcattctcaatgttatcacaaccaacataacctaaaattatgggaagtgatat 12875330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 403
Target Start/End: Original strand, 16955137 - 16955240
Alignment:
Q  300 cacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaatt 399  Q
    |||||||||||| ||| |||| ||| |  | |||||||||| ||| ||  |||||||| ||||||| |||||||||||| || ||||| ||  |||||||    
T  16955137 cacaaaagtggatgaaacaaactaatttgacatgaatgaaggaaagattagaaactcagttggattatcaatcttatcacaaccaacaaaatataaaatt 16955236  T
Q  400 atga 403  Q
    ||||    
T  16955237 atga 16955240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 19107289 - 19107368
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 248  Q
    |||| |||||||||||| ||| ||| ||||||||   |||||| |||  |||||||||||||||||||| | ||||||||    
T  19107289 agctctccttttatagggagaatttgtaactaatttggagaaatttaagaattaagtaaacttaaaaattaagcaaccca 19107368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 413
Target Start/End: Complemental strand, 29349502 - 29349376
Alignment:
Q  286 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 385  Q
    |||||||| ||| ||||||||||||| ||| |||||||  || || ||||||||| ||||||| |||| | ||||  ||||| | |||||||||||  |     
T  29349502 aaaagaaacaaattcacaaaagtggaggaaacaaattat-tggatttgaatgaaggaaatataagaaatttaattaaatttttattcttatcataacaac 29349404  T
Q  386 cataaactaaaattatgagaagtgatat 413  Q
    ||||| ||||| ||||| ||| ||||||    
T  29349403 cataagctaaatttatgggaaatgatat 29349376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 413
Target Start/End: Original strand, 15973566 - 15973650
Alignment:
Q  329 atatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 413  Q
    |||| ||||||||||| |||||||  ||||||| ||||||| |||||||| || |||||||||||||||||||| ||||| ||||    
T  15973566 atataaatgaagaaaagataggaagttcaattgtattttcagtcttatcacaaccaacataaactaaaattatgggaagttatat 15973650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 13313696 - 13313625
Alignment:
Q  177 ttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 248  Q
    ||||||||||||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||||    
T  13313696 ttttataggaagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaaccca 13313625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 13313564 - 13313484
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| ||| |||| ||  ||||||| || ||||||||| || |||||||||||||||||||| |||||||||||    
T  13313564 aatgaaggaaagatatgaaattctgttggattctcgatcttatcacaaccaacataaactaaaattatgtgaagtgatatc 13313484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 26286561 - 26286482
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 248  Q
    |||| |||||||| | | ||||||| ||||||||   ||||||||||  |||||||||||||||||||| ||||||||||    
T  26286561 agctctccttttacaaggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattatgcaaccca 26286482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 10674447 - 10674527
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| | |||||| |||| | |||| |||||||||||  || ||||||||||| |||||||| |||||||||||    
T  10674447 aatgaaggaaagagaggaaattcaactagattctcaatcttatcgcaaccaacataaactcaaattatgggaagtgatatc 10674527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 413
Target Start/End: Complemental strand, 10387647 - 10387520
Alignment:
Q  286 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 385  Q
    |||||||| ||| ||||||||||||| ||| |||| |   || || ||||||||||||| ||| |||| ||||||| ||| | | |||||||| ||  |     
T  10387647 aaaagaaacaaattcacaaaagtggaggaaacaaactcgttggatttgaatgaagaaaagataagaaattcaattgaattcttattcttatcacaacaac 10387548  T
Q  386 cataaactaaaattatgagaagtgatat 413  Q
    ||||| ||||| ||||| ||||||||||    
T  10387547 cataagctaaatttatgggaagtgatat 10387520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 413
Target Start/End: Complemental strand, 10392386 - 10392259
Alignment:
Q  286 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 385  Q
    |||||||| |||  |||||||||||| ||| |||| | | || || ||||||||| ||| ||| |||| ||||||| ||| | | |||||||| || ||     
T  10392386 aaaagaaacaaatccacaaaagtggaggaaacaaactcattggatttgaatgaaggaaagataagaaattcaattgaattcttattcttatcacaatcac 10392287  T
Q  386 cataaactaaaattatgagaagtgatat 413  Q
    ||||| ||||| ||||| ||||||||||    
T  10392286 cataacctaaatttatgggaagtgatat 10392259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 11289523 - 11289485
Alignment:
Q  109 agagagaagaaaaacattcaaagttttagaatacttttc 147  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  11289523 agagagaagaaaaagattcaaagtttcagaatacttttc 11289485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 30258781 - 30258850
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatc 238  Q
    |||| ||||| |||||| ||| ||| |||||||| |  |||||||||  |||||||||||||||||||||    
T  30258781 agctctccttatatagggagaatttgtaactaattcgaagaaacttaagaattaagtaaacttaaaaatc 30258850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 4580306 - 4580386
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| |||||||| ||| ||||||| |||||||||||| ||  |  |||| ||| ||||||| |||||||||||    
T  4580306 aatgaaggaaagataggaaattcagttggattctcaatcttatcacaacaagtataagctacaattatgggaagtgatatc 4580386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 29351074 - 29351154
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| |||||||| ||| ||| |||||||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  29351074 aatgaaggaaagataggaaattcagttgaattttcaatcttatcacaacaaacataatctaaaattatgagaagtgatatc 29351154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 237
Target Start/End: Complemental strand, 13156079 - 13155950
Alignment:
Q  109 agagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactagct-agctatccttttataggaagagtttataactaatacaga 207  Q
    |||||||||||||  |||  |||||| ||||||||| || ||| | |||||||||||| | |||| |||||||||||| |||||| || | ||||   ||    
T  13156079 agagagaagaaaagtatttgaagtttcagaatacttctcggtgcatcgaatgaactaggtgagctctccttttatagggagagttcatgattaatctgga 13155980  T
Q  208 gaaacttagaaattaagtaaacttaaaaat 237  Q
    ||||||||  | ||||||||||||||||||    
T  13155979 gaaacttaagagttaagtaaacttaaaaat 13155950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 12566159 - 12566031
Alignment:
Q  110 gagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaacta-gctagctatccttttataggaagagtttataactaatacagag 208  Q
    ||||||||||||| |||  |||||| ||||||||| || ||| | ||||||||||| || |||| | |||||||||| |||||| || | ||||   |||    
T  12566159 gagagaagaaaaatatttgaagtttcagaatacttctcggtgcatcgaatgaactaggcgagctctgcttttatagggagagttcatgattaatctggag 12566060  T
Q  209 aaacttagaaattaagtaaacttaaaaat 237  Q
    ||||||   ||||||||||||||||||||    
T  12566059 aaacttcagaattaagtaaacttaaaaat 12566031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 13260562 - 13260434
Alignment:
Q  110 gagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaacta-gctagctatccttttataggaagagtttataactaatacagag 208  Q
    ||||||||||||| |||  |||||| ||||||||| || ||| | ||||||||||| || |||| | |||||||||| |||||| || | ||||   |||    
T  13260562 gagagaagaaaaatatttgaagtttcagaatacttctcggtgcatcgaatgaactaggcgagctctgcttttatagggagagttcatgattaatctggag 13260463  T
Q  209 aaacttagaaattaagtaaacttaaaaat 237  Q
    ||||||   ||||||||||||||||||||    
T  13260462 aaacttcagaattaagtaaacttaaaaat 13260434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 29350924 - 29350996
Alignment:
Q  174 tccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacc 246  Q
    |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||    
T  29350924 tccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacc 29350996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 395
Target Start/End: Original strand, 20508427 - 20508537
Alignment:
Q  285 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 384  Q
    |||| |||| |||| |||||||||||| ||| |||| ||| |||||||||| |||||||| ||||  || ||| |||||||   | |||||||| || ||    
T  20508427 aaaatgaaacaaacccacaaaagtggaggaaacaaactaattgaatatgaacgaagaaaagatagagaattcagttggattaatattcttatcacaacca 20508526  T
Q  385 acataaactaa 395  Q
    |||||||||||    
T  20508527 acataaactaa 20508537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 2207216 - 2207115
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 268  Q
    |||| |||||||| ||| ||||||| ||||| ||    |||||||||  |||||||||||||||||||| | ||||||||| ||||| || |||||| ||    
T  2207216 agctctccttttacagggagagtttgtaactgatttgaagaaacttaataattaagtaaacttaaaaattaagcaacccatagatcagctcaagtaacaa 2207117  T
Q  269 ac 270  Q
    ||    
T  2207116 ac 2207115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 3656508 - 3656429
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    |||||| |||| |||||||| ||| ||| ||| |||||||||||| ||  |||||||  ||||||||||||||||||||||    
T  3656508 aatgaaaaaaagataggaaattcagttg-attatcaatcttatcacaacaaacataacataaaattatgagaagtgatatc 3656429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 23688669 - 23688835
Alignment:
Q  64 agattaagagaagaaagacttgttaacacaagtcaaaannnnnnnagagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaac 163  Q
    |||| ||||||||||| |||||| ||||||||||||||       ||||||||||||   |||| |||||| | |||||||||  ||||| ||||| |||    
T  23688669 agatgaagagaagaaacacttgtcaacacaagtcaaaagggg---agagagaagaaaggtattcgaagtttcaaaatacttttatgtgtagcgaattaac 23688765  T
Q  164 tag-ctagctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaactta 232  Q
    ||| | |||| ||||||||||| || ||||| |||| |||  |||||||||||  |||||||||||||||    
T  23688766 taggcgagctctccttttatagtaaaagtttgtaacaaatctagagaaacttaagaattaagtaaactta 23688835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 4872586 - 4872699
Alignment:
Q  176 cttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatc 275  Q
    |||||||||| ||||||| ||||||||   ||||||||||  |||||| ||||||||||||| | |||||||| | | || || |||||| |||| ||||    
T  4872586 cttttatagggagagtttgtaactaatttggagaaacttaagaattaaataaacttaaaaattaagcaacccacgtaccagctcaagtaacaaactgatc 4872685  T
Q  276 ggacaagctaaaaa 289  Q
    ||| ||| ||||||    
T  4872686 ggataagttaaaaa 4872699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 17162675 - 17162748
Alignment:
Q  305 aagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatca 378  Q
    ||||||| ||| ||||  || ||||||||||||||||||| |||||||||||| ||||| | ||||||||||||    
T  17162675 aagtggaggaaacaaacgaattgaatatgaatgaagaaaagataggaaactcagttggactctcaatcttatca 17162748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 9726015 - 9725935
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| |||| ||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||| ||||||||||    
T  9726015 aatgaaggaaagatagaaaattcagttggattctcaatcttatcacaataaacataacctaaaattatgaaaagtgatatc 9725935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 17159215 - 17159267
Alignment:
Q  326 tgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatca 378  Q
    ||||||||||||||||||| |||||||||| | ||||| ||||||||||||||    
T  17159215 tgaatatgaatgaagaaaagataggaaacttagttggagtttcaatcttatca 17159267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 25689127 - 25688987
Alignment:
Q  109 agagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactag-ctagctatccttttataggaagagtttataactaatacaga 207  Q
    |||||||||||||  |||  |||||| |||||||||||| |||   | |||||||||| | |||| |||||||||||| | ||||| |||| ||| |  |    
T  25689127 agagagaagaaaaggatttgaagtttcagaatacttttcggtgagtcaaatgaactaggcgagctctccttttataggtaaagtttgtaacaaatccgta 25689028  T
Q  208 gaaacttagaaattaagtaaacttaaaaatcatgcaaccca 248  Q
    ||||||||  |||||||||||||||||| | | ||||||||    
T  25689027 gaaacttaataattaagtaaacttaaaagttaagcaaccca 25688987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 412
Target Start/End: Complemental strand, 22832771 - 22832689
Alignment:
Q  330 tatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgata 412  Q
    ||||||||||| ||| ||| || | |||||||||||  || |||||||| |||||||||||||||||| ||||  ||||||||    
T  22832771 tatgaatgaaggaaagataagatattcaattggattcacattcttatcacaaacaacataaactaaaactatggaaagtgata 22832689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 4872742 - 4872814
Alignment:
Q  342 aaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    |||||||||||| ||| ||||||| |||||||||||| ||  ||||||| ||||| ||||| | |||||||||    
T  4872742 aaatataggaaattcagttggattctcaatcttatcacaacaaacataacctaaagttatggggagtgatatc 4872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 35679147 - 35679067
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| ||| |||| ||| ||||||| | |||||||||| ||  ||||||| ||||||||||| ||||| |||||    
T  35679147 aatgaaggaaagatatgaaattcagttggattcttaatcttatcacaacaaacataacctaaaattatgggaagtaatatc 35679067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 19674620 - 19674700
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| |||||||| ||| ||||||| |||||||||||| ||  ||||||| ||||||||||| |||||||||||    
T  19674620 aatgaaggaaagataggaaattcagttggattctcaatcttatcaaaacaaacataacctaaaattatgggaagtgatatc 19674700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 413
Target Start/End: Original strand, 11428766 - 11428893
Alignment:
Q  286 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 385  Q
    |||||||| |||  |||||||||||| ||| |||||||  ||| | ||||||||| ||||||| |||| ||||||| |||   | | |||||| || |||    
T  11428766 aaaagaaacaaatccacaaaagtggaggaaacaaattatttgattttgaatgaaggaaatataagaaattcaattgaattcatatttttatcacaaccaa 11428865  T
Q  386 cataaactaaaattatgagaagtgatat 413  Q
    ||||| ||||| ||||| ||||||||||    
T  11428866 cataagctaaatttatgggaagtgatat 11428893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 12689819 - 12689899
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| |||||||  ||| ||||||| |||||| ||||| ||  ||||||| ||||||||||| |||||||||||    
T  12689819 aatgaaggaaagataggaatttcagttggattctcaatcatatcacaacaaacataacctaaaattatgggaagtgatatc 12689899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 12689664 - 12689743
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 248  Q
    |||| |||||||||| | ||||||||||| | ||   ||||||||||  |||||||||||||||||||| | ||||||||    
T  12689664 agctctccttttataaggagagtttataattgatttggagaaacttaagaattaagtaaacttaaaaattaagcaaccca 12689743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 2863014 - 2862978
Alignment:
Q  64 agattaagagaagaaagacttgttaacacaagtcaaa 100  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  2863014 agatgaagagaagaaagactcgttaacacaagtcaaa 2862978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 2882318 - 2882282
Alignment:
Q  64 agattaagagaagaaagacttgttaacacaagtcaaa 100  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  2882318 agatgaagagaagaaagactcgttaacacaagtcaaa 2882282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 12260848 - 12260903
Alignment:
Q  359 ttggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| |||||||||||| || |||||||| |||||||||||||||||||||||    
T  12260848 ttggattctcaatcttatcacaaccaacataagctaaaattatgagaagtgatatc 12260903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 16036305 - 16036434
Alignment:
Q  176 cttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatc 275  Q
    |||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||||  ||||| || ||| || ||||  |||    
T  16036305 cttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagaaacaaactaatc 16036404  T
Q  276 ggacaagct-aaaaagaaataaactcacaa 304  Q
    ||| ||| | ||||||||| |||| |||||    
T  16036405 ggataagttcaaaaagaaacaaacccacaa 16036434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 23192243 - 23192142
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 268  Q
    |||| |||||||||||| ||||||| ||||||||   |||||||| |  |||||||||||||||||||| | ||||||||  ||||| || |||||| ||    
T  23192243 agctctccttttatagggagagtttgtaactaatttggagaaactaaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaacaa 23192144  T
Q  269 ac 270  Q
    ||    
T  23192143 ac 23192142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 5283510 - 5283443
Alignment:
Q  346 ataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 413  Q
    ||||||||||||||| ||||||||||||||||| ||  || |||| ||||||||| |  |||||||||    
T  5283510 ataggaaactcaattagattttcaatcttatcacaacgaatataagctaaaattaaggaaagtgatat 5283443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 16036453 - 16036532
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 413  Q
    ||||||| ||| ||| |||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||  |||||||||    
T  16036453 aatgaaggaaagataagaaattcagttggattctcaatcttatcacaacaaacataacctaaaattatggaaagtgatat 16036532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 40166647 - 40166738
Alignment:
Q  174 tccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaa 265  Q
    ||||||| |||| | | ||||||||||||   ||||||||||  |||||||||||||||||||| | ||||||||  ||||| || ||||||    
T  40166647 tccttttttagggataatttataactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaa 40166738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 39587775 - 39587697
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccc 247  Q
    |||| |||||||| ||| ||||||| ||||||||   ||||||| ||  |||||||||||||||||||| | |||||||    
T  39587775 agctctccttttacagggagagtttgtaactaatttggagaaacataagaattaagtaaacttaaaaattaagcaaccc 39587697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 150909 - 151038
Alignment:
Q  109 agagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactagct-agctatccttttataggaagagtttataactaatacaga 207  Q
    |||||||||||||  |||  |||||| ||||||||| || ||| | |||||||||||| | |||| |||||||||||| |||||| || | ||||   ||    
T  150909 agagagaagaaaagtatttgaagtttcagaatacttctcggtgcatcgaatgaactaggtgagctctccttttatagggagagttcatgattaatctgga 151008  T
Q  208 gaaacttagaaattaagtaaacttaaaaat 237  Q
    ||||||||  | ||||||||||||||||||    
T  151009 gaaacttaagagttaagtaaacttaaaaat 151038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 26134 - 26213
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 248  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||| ||||||||||| | ||||||||    
T  26134 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagttaacttaaaaattaagcaaccca 26213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 26288 - 26368
Alignment:
Q  334 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 414  Q
    ||||||| ||| |||| ||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||  ||||||||||    
T  26288 aatgaaggaaagatagaaaattcagttggattctcaatcttatcacaacaaacataacctaaaattatggaaagtgatatc 26368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 147808 - 147740
Alignment:
Q  169 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaat 237  Q
    |||| |||||||||| | ||||||| ||||||||   ||||||||||  ||||| ||||||||||||||    
T  147808 agctctccttttatatggagagtttgtaactaatttggagaaacttaagaattaggtaaacttaaaaat 147740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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