View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_24 (Length: 485)
Name: NF13040_high_24
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 225 - 480
Target Start/End: Complemental strand, 52704861 - 52704592
Alignment:
| Q |
225 |
gtaaaagatcttataacagagcacggaaggagtacatatttagacattatnnnnnnn-catcattctttaaaaatttagaatttcttaacaaattataaa |
323 |
Q |
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| T |
52704861 |
gtaaacgatcttataacaaagcacggaaggagtacatatttagacattataaaaaaaacatcattctttaaaaatttagaatttcttaacagattataaa |
52704762 |
T |
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| Q |
324 |
ttaaagagggttaaattagttaactcttctaatttactcttctttnnnnnnn-------------ccttgtaaatctttcttaacacgtgaaagtcaact |
410 |
Q |
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| T |
52704761 |
ttaaagagggttaaattagttaactcttctaatttactcttctttaaaaaaaattgtgattccaaccttgtaaatctttcttaacacgtgaaagtcaact |
52704662 |
T |
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| Q |
411 |
ctcttgaaattctttctcagacgaatagaatcacaacttcctaacatgtcattcctccgaacctaaaata |
480 |
Q |
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| T |
52704661 |
ctcttgaaattctttctcagacgaatagaatcacaacttcctaacatgtcattcctccgaacctaaaata |
52704592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 52705025 - 52704963
Alignment:
| Q |
11 |
cacagatattaaaaaatgttgtttgagtataattttatcttaaatttttgcgactagtataaa |
73 |
Q |
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| T |
52705025 |
cacagatattaaaaaatgttgtttgagtataattttatcttaaatttttgcgactagtataaa |
52704963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 52704899 - 52704868
Alignment:
| Q |
137 |
ataaacgatgttaaaaaaggaaaatgtcaaag |
168 |
Q |
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| T |
52704899 |
ataaacgatgttaaaaaaggaaaatgtcaaag |
52704868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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