View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_27 (Length: 462)
Name: NF13040_high_27
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 127 - 322
Target Start/End: Original strand, 27680920 - 27681114
Alignment:
| Q |
127 |
attcctaaggcgtccaaccccctaataatcacgtatgaggtaacaaatcaacaagataaaaaattgggggatagtttccgcttctaatgcaaatttttcc |
226 |
Q |
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| T |
27680920 |
attcctaaggtgtccaactccgtaacaatcatgtatgagatgacaaaccaacaagataaaaattagggggatggtttccacttctaatgcagtttttgcc |
27681019 |
T |
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| Q |
227 |
ttattaatttcaccaattatagtccattgcccaataaaacttacggagtatttccaattataatacaacaacaactaagcttctatcttattaggt |
322 |
Q |
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| T |
27681020 |
ttattaatttcaccaattatagtccagcgcccaacaaaacttatggagcattttcaattataatacaacaacaacaaagctt-tatcctattaggt |
27681114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 27681178 - 27681285
Alignment:
| Q |
345 |
caattgacctctaaatcttacttaacaatttcctataacttttttggtcctcctcggcctctagtgattggatagtcctcaatccgatttactttccttg |
444 |
Q |
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| T |
27681178 |
caattgacctcgaaatcttacttaacaatttcctataacttttttggtcttcctcggcctctagtaattggatggtcctcaatctgatttactgtcctta |
27681277 |
T |
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| Q |
445 |
cttaagaa |
452 |
Q |
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| T |
27681278 |
ctaaagaa |
27681285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 33271910 - 33271962
Alignment:
| Q |
291 |
acaacaacaactaagcttctatcttattaggtggggttgagtacatcgatcaaa |
344 |
Q |
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| T |
33271910 |
acaacaacaactaagctt-tatcttattaagtggggttggctacatagatcaaa |
33271962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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