View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_30 (Length: 442)
Name: NF13040_high_30
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 2608261 - 2608675
Alignment:
| Q |
18 |
ttaacaccctcccaatttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatttatccccttcactcatttccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608261 |
ttaacaccctcccaatttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatttatccccttcactcatttccc |
2608360 |
T |
|
| Q |
118 |
aaacacaaacatttccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgttgcaaattcaagcctatccgcaagaggtacact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
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| T |
2608361 |
aaacacaaacatttccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgtagcaaattcaagcctatctgcaagaggcacact |
2608460 |
T |
|
| Q |
218 |
aaattctctccaacaattattcccaacatcaaatcccatcacattatatgccctagccgaggtaatccaatacaacgttgttgttcttcttccctctata |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||| |
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| T |
2608461 |
aaattccctccaacaattattcccaacatcaaatcccattacactatatgccctagctgaggttatccaatacaatgttgttgttcttgttccctctata |
2608560 |
T |
|
| Q |
318 |
cacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgtcaatacaagattcatatattt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608561 |
cacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgtcaatacaagattcatatattt |
2608660 |
T |
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| Q |
418 |
caacggtcggttcat |
432 |
Q |
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||||||||||||||| |
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| T |
2608661 |
caacggtcggttcat |
2608675 |
T |
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