View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_31 (Length: 434)
Name: NF13040_high_31
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 16976062 - 16976461
Alignment:
| Q |
20 |
atattaagagattgcattgtattttatactgaggaatctaattaattattgtttggtttcttaaacaaaacaaaaaggatttatagataacactcatgtc |
119 |
Q |
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| T |
16976062 |
atattaagagattgcattgaattttgtactgaggaatctaattaattattgtttggtttcttaaacaaaacaaaaaggatttatagataacactcatgtc |
16976161 |
T |
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| Q |
120 |
tgctacaccacgaaaccatttgtctaggttttttcatttcatttcaattttattattgttaaaagtatgccgaaaaaccacatcagaataatttctatta |
219 |
Q |
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| T |
16976162 |
tgctacaccacgaaaccatttgtctaggttttttcatttcatttcaattttattattgttaaaagtatgccgaaaaaccacatcagaataatttctatta |
16976261 |
T |
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| Q |
220 |
ttatccatacagatgctttcatatacaacatatttgagatttgaaatgattcccactccagaatcaatctcatgtgcattgtttgtttcggtggctcttg |
319 |
Q |
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| T |
16976262 |
ttatccatacagatgctttcatatacaacatatttgagatttgaaatgattcccactccagaatcaatctcatgtgcattgtttgtttcggtggctcttg |
16976361 |
T |
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| Q |
320 |
cattattatccattgatcagaataaagtttgactccaattcttatccttttattttaagttgatctaaaggctcaaattgattcacttaattctcacagg |
419 |
Q |
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| T |
16976362 |
cattattatccattgatcagaataaagtttgactcgaattctcatccttttattttaagttgatctaaaggctcaaattgattcacttaattctcacagg |
16976461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 18669230 - 18669283
Alignment:
| Q |
225 |
catacagatgctttcatatacaacatatttgagatttgaaatgattcccactcca |
279 |
Q |
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| T |
18669230 |
cataaagatgctttcatatacaacatatttgagctttggaatg-ttcccactcca |
18669283 |
T |
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