View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_high_33 (Length: 420)
Name: NF13040_high_33
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 89 - 410
Target Start/End: Complemental strand, 28257996 - 28257675
Alignment:
| Q |
89 |
gtgctaaattaatttatccggaaaattgaagtatataccttaggaacaccaggataaacattaggaccatctggcctattgattataacaccttgccttg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28257996 |
gtgctaaattaatttatccggaaaattgaagtatataccttaggaacaccaggataaacattaggaccatctggcctattgattataacaccttgccttg |
28257897 |
T |
|
| Q |
189 |
gattttctttatggtaggcaatatcatcatacatgaaaacaattatgttttcatcttgaaggccaccattttttaatacatggtaggcatgacaaatatt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28257896 |
gattttctttatggtaggcaatatcatcatacatgaaaacaattatgttttcatcttgaaggccaccattttttaatacatggtaggcatgacaaatatt |
28257797 |
T |
|
| Q |
289 |
tgcttggtgcctataatttgggtaatcttttgaaccagcaactagtaatgcccattttttccctactacttcaaaattaccttgctcattatgttcatga |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28257796 |
ggcttggtgcctataatttgggtaatcttttgaaccagcaactagtaatgcccattttttccttactacttcaaaattaccttgctcattatgttcatca |
28257697 |
T |
|
| Q |
389 |
accataggtcgaataccctttg |
410 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28257696 |
accataggtcgaataccctttg |
28257675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 121 - 401
Target Start/End: Complemental strand, 29927265 - 29926985
Alignment:
| Q |
121 |
atataccttaggaacaccaggataaacattaggaccatctggcctattgattataacaccttgccttggattttctttatggtaggcaatatcatcatac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29927265 |
atataccttaggaacaccaggataaacattaggaccatccggtctattgattataacaccaggtcttggattttcattatggtaggcaatatcatcatac |
29927166 |
T |
|
| Q |
221 |
atgaaaacaattatgttttcatcttgaaggccaccattttttaatacatggtaggcatgacaaatatttgcttggtgcctataatttgggtaatcttttg |
320 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||| | ||||||||||||||| | |||| |||||| |
|
|
| T |
29927165 |
atgaaaacaattatgttttcatcttgaagaccaccactttttaatatatggtaggcatgacaaatattagattggtgcctataattggagtaaccttttg |
29927066 |
T |
|
| Q |
321 |
aaccagcaactagtaatgcccattttttccctactacttcaaaattaccttgctcattatgttcatgaaccataggtcgaa |
401 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |||| |
|
|
| T |
29927065 |
aaccagcaaccagtaaagcccattttttccctactacttcaaaattaccttgctcgtcatgtttatgaaccataggacgaa |
29926985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 352
Target Start/End: Complemental strand, 11323492 - 11323343
Alignment:
| Q |
203 |
taggcaatatcatcatacatgaaaacaattatgttttcatcttgaaggccaccattttttaatacatggtaggcatgacaaatatttgcttggtgcctat |
302 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||||||| ||| || || |||||||||| || |||||||| ||||||| ||||||||||||| |
|
|
| T |
11323492 |
taggcaatgtcatcgtacatgaaaacaacgatgttttcatctttaagaccgcctttttttaatatttgataggcatggcaaatatcggcttggtgcctat |
11323393 |
T |
|
| Q |
303 |
aatttgggtaatcttttgaaccagcaactagtaatgcccattttttccct |
352 |
Q |
| |
|
|||| |||| | || || || |||||||| || |||||||| |||||| |
|
|
| T |
11323392 |
aattcacgtaaccattcgatcctgcaactagaaaggcccatttcttccct |
11323343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 4493595 - 4493556
Alignment:
| Q |
206 |
gcaatatcatcatacatgaaaacaattatgttttcatctt |
245 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
4493595 |
gcaatatcatcatacatgaaaacaataatgttttcttctt |
4493556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University