View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_high_40 (Length: 379)
Name: NF13040_high_40
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_40 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 53453204 - 53453566
Alignment:
| Q |
17 |
agaattcatattccgttctaaactccccgatattgaaattccaacacaccttccattacactcttactgtttccaaaacctctctcaattcaacaaccgt |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53453204 |
agaattcatattccgttctaaacttcccgatattgaaattccaacacaccttccattacactcttactgtttccaaaacctctctcaattcaacaaccgt |
53453303 |
T |
|
| Q |
117 |
ccatgtctcatcaacggcgacaccggcgaaaccctaacctactccgacgtccacctcaccgtccgcaaattcgcctctggtctaaacactcttggaatcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
53453304 |
ccatgtctcatcaacggcgacaccggcgaaaccctaacctactccgacgtccacctcaccgtccgcaaaatcgcagccggtctaaacactcttggaatcc |
53453403 |
T |
|
| Q |
217 |
aacaaggtgatgtcatcatgatcgtcctccgtaactctcctcaatttgctctcaccttcctcggtgcctccttccgtggcgcggttatcaccaccgcaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53453404 |
aacaaggtgatgtcatcatgatcgtcctccgtaactctcctcaatttgcactcaccttcctcggtgcctccttccgcggcgcggttatcaccaccgcaaa |
53453503 |
T |
|
| Q |
317 |
tcccttctacacctcatcggagctcgctaaacaagccaccgcaacaaaatctaaactcatcat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53453504 |
tcccttctacacctcatcggagctcgctaaacaagccaccgcaacaaaatctaaactcatcat |
53453566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University