View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_42 (Length: 375)
Name: NF13040_high_42
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 360
Target Start/End: Original strand, 5763070 - 5763398
Alignment:
| Q |
22 |
gacttaggctaattaaatttgtcaaaagaagtatgccactttgttatgctaattttaaaaatatctatggaaactggaaaggtgannnnnnnnnnnnaca |
121 |
Q |
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| T |
5763070 |
gacttaggctaattaaatttgtcaaaagaagtatgccactttgttatgctaatttttaaaatatctatggaaa-------ggtgattttttctttttaca |
5763162 |
T |
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| Q |
122 |
ttcgtgtatcaaatcaaattaaactttacgtgtaaaaatgaatcttgatatgaaaatgaatgagtcagtatttgaataaatacccttgtttattgccatt |
221 |
Q |
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| T |
5763163 |
ttcgtgtatcaaatcaaattaaactttacgtgtaaaaatgaatcttgatatgaaaatgaatgagtcagtatttgaataaatacccttgtttattgccatt |
5763262 |
T |
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| Q |
222 |
caacttcccactttactctaacccacaatatggcacataacactgaggttgatgatgaacatgaaagagataacaaagccaaccagaaagtttcattcca |
321 |
Q |
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| T |
5763263 |
caacttcccactttactctaactcacaatatggcacataacactgaggt---tgatgaacatgaaagagataacaaagccaaccagaaagtttcattcca |
5763359 |
T |
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| Q |
322 |
caaactcttcacttttgctgatagtcttgatgtaacatt |
360 |
Q |
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| T |
5763360 |
caaactctttacttttgctgatagtcttgatgtaacatt |
5763398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 29332842 - 29332768
Alignment:
| Q |
292 |
taacaaagccaaccagaaagtttcattccacaaactcttcacttttgctgatagtcttgatgtaacatttgatgat |
367 |
Q |
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| T |
29332842 |
taacaaagccaaccaaatagttccattctacaagctctttagttttgctgatcgtcttgacgtaac-tttgatgat |
29332768 |
T |
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