View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_44 (Length: 371)
Name: NF13040_high_44
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 28439106 - 28439451
Alignment:
| Q |
10 |
aagaatatatattaacgaagtatatagcccatgtaccatttgcaggaatgataatactccaatctaattgtctacataacagaacatgaacttgtccagt |
109 |
Q |
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| T |
28439106 |
aagaaaatatattaacgaagtatatagcccatgtaccatttgcaggaatgataatactccaatctaattgtctacataacagaacatgaacttgtccagt |
28439205 |
T |
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| Q |
110 |
caatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaatattgttggaatgtacaaaatcaaactcaacaaattgagattcacattggcatga |
209 |
Q |
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| T |
28439206 |
caatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaatattgttggaatgtacaaaatcaaactcaacaaattgagattcacattggcatga |
28439305 |
T |
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| Q |
210 |
taaatgtttgtgattcaagcacttgaacatggaaagactatagaagcaaagaaagtgttgcagcagaaatataagcctatctacgatagctgattgtaaa |
309 |
Q |
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| T |
28439306 |
taaatgtttgtgattcaagcacttgaacatggaaagactatagaagcaaagaaagtgttgcagcagaaatataagcctatctacgatagctgattgtaaa |
28439405 |
T |
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| Q |
310 |
gtgcaaattggagccagttctaaaactatctaaaaaaccatgtttc |
355 |
Q |
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| T |
28439406 |
gtgcaaattggagccagttctaaaactatctaaaaaaccatgtttc |
28439451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 1023563 - 1023668
Alignment:
| Q |
230 |
acttgaacatggaaagactatagaagcaa-agaaagtgttgcagcagaaatata-agcctatctacgatagctgattgtaaagtgcaaattggagccagt |
327 |
Q |
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| T |
1023563 |
acttgaaccaggaatgactatggaagcaagaaaaactgttacagcagaaatatttagattatctatgataaatgattgtaaagtgcaaattggagcaagt |
1023662 |
T |
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| Q |
328 |
tctaaa |
333 |
Q |
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|||||| |
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| T |
1023663 |
tctaaa |
1023668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 332
Target Start/End: Complemental strand, 1047117 - 1047023
Alignment:
| Q |
240 |
ggaaagactatagaagcaaaga-aagtgttgcagcagaaatata-agcctatctacgatagctgattgtaaagtgcaaattggagccagttctaa |
332 |
Q |
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||||||||||| ||||||| | || |||| ||||||||||||| ||| ||| || ||||| |||||| |||||||||||||||| |||||||| |
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| T |
1047117 |
ggaaagactatggaagcaagaacaaatgttacagcagaaatatatagcttatgtatgataggtgattgcaaagtgcaaattggagtaagttctaa |
1047023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 35821316 - 35821360
Alignment:
| Q |
287 |
tatctacgatagctgattgtaaagtgcaaattggagccagttcta |
331 |
Q |
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| T |
35821316 |
tatctatgattgatgattgtaaagtgcaaattggagcaagttcta |
35821360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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