View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_45 (Length: 366)
Name: NF13040_high_45
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 233 - 342
Target Start/End: Complemental strand, 11856832 - 11856723
Alignment:
| Q |
233 |
ttgatatgagttttgttaacaatatagggtttcaatagaataaaaaagagacggctagggtttcaatattgtatcaatggcatagcataacatagattat |
332 |
Q |
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| T |
11856832 |
ttgatataagttttgttaactatatagggtttcaatagaataacaaagagacgactagggtttcaatattgtatcaatggcatagcataacatagattat |
11856733 |
T |
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| Q |
333 |
aaactttagg |
342 |
Q |
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|||||||||| |
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| T |
11856732 |
aaactttagg |
11856723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 11856888 - 11856833
Alignment:
| Q |
136 |
aaaaatttaacaccctatcactaagaaattttcagtttatgaaaacagttctctac |
191 |
Q |
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| T |
11856888 |
aaaattttaacaccctatctctaagaaattttcagtttatgaaaacagctctctac |
11856833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 11856939 - 11856887
Alignment:
| Q |
22 |
ctaattgaatattattggatgctttggatctcctttagtgaaaacagcacgaa |
74 |
Q |
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| T |
11856939 |
ctaattgaatattattggatgttttggatctcctatggtgaaaattgcacgaa |
11856887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 54137959 - 54138015
Alignment:
| Q |
243 |
ttttgttaacaatatagggtttca-atagaataa-aaaagagacggctagggtttca |
297 |
Q |
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| T |
54137959 |
ttttgttaacaatatagggtttcagagagaataacaaaagagactgttagggtttca |
54138015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 14516685 - 14516776
Alignment:
| Q |
245 |
ttgttaacaatatagggtttcaataga--ataaaaaagagacggctagggtttcaatattgtatcaatggcatagcataacatagattataaac |
336 |
Q |
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||||||||||| | ||||| ||||||| |||| ||||||||||||||||||||||||| |||||||| | ||||||||||| ||||| |||| |
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| T |
14516685 |
ttgttaacaattttgggttacaatagagaataacaaagagacggctagggtttcaatat--tatcaatgacttagcataacatcgattacaaac |
14516776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 15039497 - 15039443
Alignment:
| Q |
246 |
tgttaacaatatagggtttcaatagaataaaaaagagacggctagggtttcaata |
300 |
Q |
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| T |
15039497 |
tgttaacaatatagggtttcaatagaacaacatagagacagccaaggtttcaata |
15039443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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