View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_56 (Length: 292)
Name: NF13040_high_56
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_56 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 52628372 - 52628094
Alignment:
| Q |
16 |
atgctgattctgttgatgaggtacgtatgcccaaacatatatatttccttgtttaatttgtttgtgtgaattgtgatagttactaccattgctttcggtg |
115 |
Q |
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| T |
52628372 |
atgctgattctgttgatgaggtacgtatgcccaaacatatatatttccttgtttaatttgtttgtgtgaattgtgatagttactaccattgctttcggtg |
52628273 |
T |
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| Q |
116 |
ttactattaatatattaaccgttaaactctcttaatgcgctatgacaatgaaacatttgtatatcataattttgtttttataaaattagcttatttttgt |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52628272 |
ttacaattaatatattaaccgttaaactctcttaatgcgctatgacaatgaaacatttgtatatcataattttgtttttataaaattagcttatttttgt |
52628173 |
T |
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| Q |
216 |
tc--nnnnnnnnnnnggttatttagtgtataataacatgtctatatcgaatttggattccttgctttcgtggatttcta |
292 |
Q |
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|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52628172 |
tcaaaaaaaaaaaaaggctatttagtgtataataacatgtccatatcgaatttggattccttgctttcgtggatttcta |
52628094 |
T |
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