View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_high_57 (Length: 291)
Name: NF13040_high_57
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_57 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 51874404 - 51874119
Alignment:
| Q |
1 |
agagaacctcctgctagttctgtctcgccgagatagccaaggaaaagcatagagatcatagctcttgaatataagagtaaaccagttatagctgttggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51874404 |
agagaacctcctgctagttctgtctcgccgagatagccaaggaaaagcatagagatcatagctcttgaatataagagtaaaccagttatagctgttggac |
51874305 |
T |
|
| Q |
101 |
ctgatattttacctatggccttcaattcttctatcacctgaaatattcatacattaagaacaaaagttatatataatattaaattcaagggtatgtttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51874304 |
ctgatattttacctatggccttcaattcttctatcacctgaaatattcatacattaagaacaaaagttatatataatattaaattcaagggtatgtttgt |
51874205 |
T |
|
| Q |
201 |
ttgttaatcataataata---------ataaaactggcattgtttgttttcatatgttgtgattgtgactaagagagacatgatag |
277 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51874204 |
ttgttaatcataataataataataataataaaactggcattgtttgttttcatatgttgtgattgtgactaagagagacatgatag |
51874119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 28506431 - 28506543
Alignment:
| Q |
4 |
gaacctcctgctagttctgtctcgccgagatagccaaggaaaagcatagagatcatagctcttgaatataagagtaaaccagttatagctgttggacctg |
103 |
Q |
| |
|
||||||||||||||||| |||| || ||||| |||||||||| ||| || |||||||||||||||||||| | |||||||||||| | ||||||||||| |
|
|
| T |
28506431 |
gaacctcctgctagttccatctctccaagatatccaaggaaaatcattgatatcatagctcttgaatataacaataaaccagttattgttgttggacctg |
28506530 |
T |
|
| Q |
104 |
atattttacctat |
116 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
28506531 |
atatttttcctat |
28506543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University