View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_high_59 (Length: 284)
Name: NF13040_high_59
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_59 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 11337856 - 11338096
Alignment:
| Q |
6 |
aataaattggttcaactggtttagaaaaccagccaaaatcttggtccaaaacggacttatcaaatcgatatctaatgttaaattagaagactccgaatat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
11337856 |
aataaattggttcaactggtttagaaaaccagccaaaatcttggtccaaaacggacttatcaaatcgatatctaat--taagttagaagactccgaatac |
11337953 |
T |
|
| Q |
106 |
cattagtcattgacaattccagacgtttaacgggtacccacgggtgtaatatagaggtatttaacataactaatgatccaagtaataagttaaaacgcga |
205 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11337954 |
cattagtcatcgacgattccagacgtttaacgggtacccacgggtgtaatatacaggtatttaacataactaatgatccaagtaataagttaaaacgcga |
11338053 |
T |
|
| Q |
206 |
aattttgtggcaggccatacaaagttcaagttatcgatccctc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11338054 |
aattttgtggcaggccatacaaagttcaagttatcgatccctc |
11338096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University