View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_64 (Length: 278)
Name: NF13040_high_64
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_64 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 33948238 - 33948480
Alignment:
| Q |
18 |
gtaactgttcctctccttacatcactgctccttcttcccctcaacgctttgccaacaacttcttcttcagtgctcctaccagcccctctcgtgtttcacc |
117 |
Q |
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| T |
33948238 |
gtaactgttcctctccttacatcactgctccttcttcccctcaacgctttgccaacaacttcttcttcagtgctcctaccagcccctctcgtgtttcacc |
33948337 |
T |
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| Q |
118 |
tcttttctctgaatcctctcttccttttcatcaagaaaccaaactcaacaaccaccataacaactgcagttttggcaacgatgacgattttgagtttgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33948338 |
tcttttctctgaatcctctcttccttttcatcaagaaaccaaacccaacaaccaccataacaactacagttttggcaacgatgacgattttgagtttgat |
33948437 |
T |
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| Q |
218 |
ttcagtggcaacctccaaaaagagtctctttccgccgccgatg |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33948438 |
ttcagtggcaacctccaaaaagagtctctttccgccgccgatg |
33948480 |
T |
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