View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_7 (Length: 714)
Name: NF13040_high_7
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 207 - 698
Target Start/End: Original strand, 46185519 - 46186011
Alignment:
| Q |
207 |
atacattgtatgaaatgctcttt-gtgttttttaatagacctgaagtcaaaagtctagttcgtaataaatatcaagtaggtcacttagnnnnnnnggtca |
305 |
Q |
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| T |
46185519 |
atacattgtatgaaatgctcttttgtgttttttaatagacctgaagtcaaaagtctagttcgtaataaatatcaagtaggtcacttagtttatttggtga |
46185618 |
T |
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| Q |
306 |
ttctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggtattctcacctgtgttcagatacctgcactgtgaattctaaaaagt |
405 |
Q |
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| T |
46185619 |
ttctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggtattctcacctgtgttcagatacctccactgtgaattctaaaaagt |
46185718 |
T |
|
| Q |
406 |
attgtactctatcatcaaatgataaatttgctttcattttcatagccgaaacacgaaggttaccaaattctagaataatgaacttgtataaattccctga |
505 |
Q |
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| T |
46185719 |
attgtactctatcatcaaatgataaatttgctttcattttcatagccgaaacacgaaggttaccaaattctagaataatgaacttgtataaattctctga |
46185818 |
T |
|
| Q |
506 |
ttcttcagcaagatcaactaatgaacttgctttttgttgtgcatgcacccttcttaaaatcttttggtacgtagcatccttggtccaatgttgcagaatg |
605 |
Q |
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| T |
46185819 |
ttcttcagcaagatcaactaatgaacttgctttttgttgtgcatgcacccttcttaaaatcttttggtacgtagcatccttggtccaatgttgcagaatg |
46185918 |
T |
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| Q |
606 |
aaatgatcagggatttgcacaataccttttgattgaaaaatcccatgaattcatatagtggcagccacatttagcaactcctggcctaaatct |
698 |
Q |
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| T |
46185919 |
aaatgatcagggatttgcacaataccttttgattgaaaaatcccatgaattcatatagtggcagccacatttagcaacttttggcctaaatct |
46186011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 46185337 - 46185483
Alignment:
| Q |
65 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaa |
164 |
Q |
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| T |
46185337 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctccagagaagacgaagcatcatgaa |
46185436 |
T |
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| Q |
165 |
gtaacaattcgtttcaatgtgactgttggacctgacctgagtataca |
211 |
Q |
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| T |
46185437 |
gtaacaattcgtttcaatgtgactgttgcacctgacctgagtataca |
46185483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 46185239 - 46185306
Alignment:
| Q |
18 |
tgaattatgaacaatatggtgagttttgtttaattttcatttggtactttacattctaaatgtttgat |
85 |
Q |
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| T |
46185239 |
tgaattatgaacaatatggtgagttttgtttaattttcatttggtactttacattctaaatgtttgat |
46185306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 46169863 - 46169957
Alignment:
| Q |
267 |
gtaataaatatcaagtaggtcacttagnnnnnnnggtcattctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggta |
361 |
Q |
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| T |
46169863 |
gtaataaatgtcaagtaggtcacttagtttttttggtgattctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggta |
46169957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 5895340 - 5895242
Alignment:
| Q |
80 |
tttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaagtaacaattcgttt |
178 |
Q |
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| T |
5895340 |
tttgatagtgaacaaattcagatgagaagagaatgattgagatgacaaagtggaagctccaccaaagaagacgaagcaccgggaagtaacaatttgttt |
5895242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 5895400 - 5895343
Alignment:
| Q |
54 |
tcatttggtactttacattctaaatgtttgatagtgaacaaattcagaagaaaagaga |
111 |
Q |
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| T |
5895400 |
tcatttggtactttacattctaactatttgatagtgatcaaattcagatgagaagaga |
5895343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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