View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_high_74 (Length: 263)

Name: NF13040_high_74
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_high_74
NF13040_high_74
[»] chr2 (3 HSPs)
chr2 (1-239)||(23852957-23853195)
chr2 (14-239)||(23752256-23752481)
chr2 (25-239)||(22619649-22619863)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23853195 - 23852957
Alignment:
Q  1 cgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853195 cgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttac 23853096  T
Q  101 tatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853095 tatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttc 23852996  T
Q  201 ctcttggaaaggaaatgactgttgtaaatggaaaggtat 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23852995 ctcttggaaaggaaatgactgttgtaaatggaaaggtat 23852957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 23752481 - 23752256
Alignment:
Q  14 tgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtgg 113  Q
    ||||||| || ||||||| ||||||| ||||||||||||||| |||||||   |||||||| |||||||| |||| ||||||||||||||||||  || |    
T  23752481 tgcttcattcacttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtag 23752382  T
Q  114 ccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaagga 213  Q
    ||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||| |||||    
T  23752381 ccattcatcatttggttgcatagaacaagagaggcaagcacttcttgaactcaaaggaagctttaatgatacatcattaagactttcctcttgggaagga 23752282  T
Q  214 aatgactgttgtaaatggaaaggtat 239  Q
    ||||| ||||||||||||||||||||    
T  23752281 aatgaatgttgtaaatggaaaggtat 23752256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 22619863 - 22619649
Alignment:
Q  25 cttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcat 124  Q
    ||||||| ||||||| ||||||||||||||| |||||||   |||||||| |||||||| |||| ||||||||||||||||||  || ||||||||||||    
T  22619863 cttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcat 22619764  T
Q  125 ttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttg 224  Q
    |||||||| | |||||||||||| |||||||| | | | |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| |||||    
T  22619763 ttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttg 22619664  T
Q  225 taaatggaaaggtat 239  Q
    |||||||||||||||    
T  22619663 taaatggaaaggtat 22619649  T

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