View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_high_77 (Length: 255)
Name: NF13040_high_77
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_77 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 14042459 - 14042628
Alignment:
| Q |
71 |
gaataaggaatatcataccttatgtgatctccaaacatcaaaatagtttaattcatctgataacattgtaataatattatagaaggcgatccattctctt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
14042459 |
gaataaggaatatcataccttatgtgatttccaaacatcaaaatagtttcattcatctgataacattgtaataatattatagaagacgattcattctctt |
14042558 |
T |
|
| Q |
171 |
aattatatgcgatgtttacacctcttatctattttagactacttgtttcttttatatataacatcttatt |
240 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14042559 |
aattatatgcaatgtttacacctcttatctattatagactacttgtttcttttaaatataacatcttatt |
14042628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 14038910 - 14039014
Alignment:
| Q |
90 |
ttatgtgatctccaaacatcaaaatagtttaattcatctgataacattgtaataatattatagaaggcgatccattctcttaattatatgcgatgtttac |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
14038910 |
ttatgtgatctccaaacatcaaaatagtttcattcatctgataacactgtaataatattatagaaggcgatccattctcttaactatatgcaatgtttac |
14039009 |
T |
|
| Q |
190 |
acctc |
194 |
Q |
| |
|
||||| |
|
|
| T |
14039010 |
acctc |
14039014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 39882944 - 39883033
Alignment:
| Q |
13 |
cagagccattgttttatgtaacgtg-gctattaaataatttcgaaaatcttagcttatagaataaggaatatcataccttatgtgatctc |
101 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
39882944 |
cagacccattgctttatgtaacgtgagctataaaataatttaaaaaatcttggcttatagaataaggaatatcatgccttatgtggtctc |
39883033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University