View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_81 (Length: 252)
Name: NF13040_high_81
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_81 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47307193 - 47306954
Alignment:
| Q |
1 |
tttatgaggaaactgccttaaattacatgtaaatagattgttttgtttgtaaaaggatccacaatttgaacttaaagtgtctctctagtttaacaacaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307193 |
tttatgaggaaactgccttaaattacatgtaaatagattgttttgtttgtaaaaggatccacaatttgaacttaaagtgtctctctagtttaacaacaat |
47307094 |
T |
|
| Q |
101 |
tgaaagtgtatatgaatacctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgatatccttagacaatacaatagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307093 |
tgaaagtgtatatgaatacctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgatatccttagacaatacaatagc |
47306994 |
T |
|
| Q |
201 |
tccaggggtcaaagctgacataattagacctctttgctct |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
47306993 |
tccaggggtcaaagctgacataattagacctctttgctct |
47306954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 23695010 - 23694890
Alignment:
| Q |
120 |
ctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgatatccttagacaatacaatagctccaggggtcaaagctgac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
23695010 |
ctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgaaatcattagacaatacaatagctccaggggtcaaagctgac |
23694911 |
T |
|
| Q |
220 |
ataattagacctctttgctct |
240 |
Q |
| |
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||||||||||||||||||||| |
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| T |
23694910 |
ataattagacctctttgctct |
23694890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 20513285 - 20513165
Alignment:
| Q |
120 |
ctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgatatccttagacaatacaatagctccaggggtcaaagctgac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
20513285 |
ctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgacatctttagacaatacaatagctccaggggtcaaagctgac |
20513186 |
T |
|
| Q |
220 |
ataattagacctctttgctct |
240 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
20513185 |
ataattagacctctttgctct |
20513165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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