View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_high_84 (Length: 244)
Name: NF13040_high_84
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_84 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 3636294 - 3636077
Alignment:
| Q |
11 |
cacagatattgattatcaccacaagtaataagaaaactgtgaaatttgtaaacttcaaagatgagtagacaagtaaggtaacaacagtggcaccagcaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3636294 |
cacagatattgattatcaccacaagtaataagaaaactgtgaaatttgtaaacttcaaagatgagtagacaagtaaggtaactacagtggcaccagcaat |
3636195 |
T |
|
| Q |
111 |
aataaaagacagattttgtgtcaccagccacaattgcaatacctgccaatgaaaaaatgaagatattgtttactacaataaagttcaactttatagcaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3636194 |
aataaaagacagattttgtgtcaccagccacaattgcaatacctgccaatgaaaaaatgaagatattgtttactacaataaagttcaactttatagcaga |
3636095 |
T |
|
| Q |
211 |
aactaacaaggaattatt |
228 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3636094 |
aactaacaaggaattatt |
3636077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 3645546 - 3645385
Alignment:
| Q |
11 |
cacagatattgattatcaccacaagtaataagaaaactgtgaaatttgtaaacttcaaagatgagtagacaagtaaggtaacaacagtggcaccagcaat |
110 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3645546 |
cacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaacttcaaagatgagtagactagtaaggtaacaacagtggcaccagcaat |
3645447 |
T |
|
| Q |
111 |
aataaaagacagattttgtgtcaccagccacaattgcaatacctgccaatgaaaaaatgaag |
172 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
3645446 |
aataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaataaaaaaatgaag |
3645385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University