View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_87 (Length: 240)
Name: NF13040_high_87
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_87 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 1182880 - 1182665
Alignment:
| Q |
18 |
gtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctact |
117 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182880 |
gtatctactgatgatacttaccgcaaagcatatatcaggtctgttattgcataggcatctcagagatccaactatcggtttgaattatgtagcttctact |
1182781 |
T |
|
| Q |
118 |
ttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182780 |
ttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaa |
1182681 |
T |
|
| Q |
218 |
tgtacttctgatgatg |
233 |
Q |
| |
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|||||||||||||||| |
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| T |
1182680 |
tgtacttctgatgatg |
1182665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 26076324 - 26076111
Alignment:
| Q |
20 |
atctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctacttt |
119 |
Q |
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|||||||| | |||||||| |||||||||||||| |||||||| ||||||| |||||| || ||||| |||||| ||||||||| |||| || | || |
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| T |
26076324 |
atctactgattatacttactgcaaagcatatatctggtctgttgttgcataagtatcttagtgatcccactatctgtttgaattcagtagactccgcctt |
26076225 |
T |
|
| Q |
120 |
ctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatg |
219 |
Q |
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|||||||| ||||||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| |||||||| |||||| |
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| T |
26076224 |
ttcttcattactacattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatctttcaagcagttctccaatg |
26076125 |
T |
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| Q |
220 |
tacttctgatgatg |
233 |
Q |
| |
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|||||||| ||||| |
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| T |
26076124 |
tacttctgttgatg |
26076111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 4958615 - 4958828
Alignment:
| Q |
20 |
atctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctacttt |
119 |
Q |
| |
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|||||||| |||||||||| ||||||||||||| |||||||| ||||||| |||||||| ||||| |||||| ||||||||| |||| || || || |
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| T |
4958615 |
atctactgatgatacttactgcaaagcatatatatggtctgttgttgcataagtatctcaatgatcccactatctgtttgaatttagtagactccacctt |
4958714 |
T |
|
| Q |
120 |
ctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatg |
219 |
Q |
| |
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|||||||| || |||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| |||||||| |||||| |
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| T |
4958715 |
ttcttcattactgcattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatatttcaagcagttctccaatg |
4958814 |
T |
|
| Q |
220 |
tacttctgatgatg |
233 |
Q |
| |
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|||||||| ||||| |
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| T |
4958815 |
tacttctgctgatg |
4958828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 12370739 - 12370527
Alignment:
| Q |
20 |
atctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctacttt |
119 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |||||| | ||||||| ||||||||| ||||| ||||| ||||||||| |||| || || || |
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| T |
12370739 |
atctactgatgatacttactgcaaagcatatatctggtctgctgttgcataagtatctcagtgatcccactatatgtttgaattcagtagactccacctt |
12370640 |
T |
|
| Q |
120 |
ctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatg |
219 |
Q |
| |
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|||||||| || |||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| ||||||| |||||| |
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| T |
12370639 |
ttcttcattactgcattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatctttcaagcagttatccaatg |
12370540 |
T |
|
| Q |
220 |
tacttctgatgat |
232 |
Q |
| |
|
|||||||| |||| |
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|
| T |
12370539 |
tacttctgctgat |
12370527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 5243124 - 5242957
Alignment:
| Q |
29 |
tgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcatt |
128 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||| |||| |||||||| | ||| | |||| | |||||| |||| |||||||||||||||||| |
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| T |
5243124 |
tgatacttactgcaaagcatatatctggtctactattacataagtatctcatgg-tcctattatctgcatgaattcagtaggttctactttctcttcatt |
5243026 |
T |
|
| Q |
129 |
gctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaa |
197 |
Q |
| |
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| | |||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||||||| |
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| T |
5243025 |
gatgcattcatctagcttagcatttgtttcagaaggattagttgcagtgttacaatctaccatatcaaa |
5242957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 32368658 - 32368862
Alignment:
| Q |
29 |
tgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcatt |
128 |
Q |
| |
|
|||||||||| |||||| ||||||| ||| |||| ||||||| ||| ||| ||||| |||||| ||||||||| |||| || |||| | |||||||| |
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| T |
32368658 |
tgatacttactgcaaaggatatatctggtttgttgttgcataagtacatcaatgatcccactatctgtttgaattcagtaggttttactctttcttcatt |
32368757 |
T |
|
| Q |
129 |
gctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttcaccaatgtacttctga |
228 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| ||||| | || ||||||| || |||| | |||| |||| |||||||| ||||||||||| || |
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| T |
32368758 |
agtacactcatccaacttagcatttgtttcagatggattcgatgcaatgttgcagtcaatcatttgaaacctttcaagcagttccccaatgtacttttgt |
32368857 |
T |
|
| Q |
229 |
tgatg |
233 |
Q |
| |
|
||||| |
|
|
| T |
32368858 |
tgatg |
32368862 |
T |
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