View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_90 (Length: 231)
Name: NF13040_high_90
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_90 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1328548 - 1328335
Alignment:
| Q |
1 |
ttcttgagttgtggactgaatattctattacatctaaacaaaattctgcgacaaaacatactgctagtgcctgtatatattttattagttacctactttt |
100 |
Q |
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| T |
1328548 |
ttcttgagttgtggactgaatattctattacatctaaacaaaattctgctacaaaacatactgctaatgcctgtatatattttattagttacctactttt |
1328449 |
T |
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| Q |
101 |
gatcaatgaggtaaaacaatccaataacatatatctacagccatgcataatggaattgcagtaaggttgnnnnnnnnntcatctacaagatagcagaacg |
200 |
Q |
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| T |
1328448 |
gatcaatgaggtaaaacaatccaataatatatatctacagccatgcataatggaattgcagtgaggttg-aaaaaaaatcatctacaagatagaagaatg |
1328350 |
T |
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| Q |
201 |
tgagcggcagtaatt |
215 |
Q |
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| T |
1328349 |
tgagcggcagtaatt |
1328335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 44187209 - 44187126
Alignment:
| Q |
76 |
tatattttattagttacctacttttgatcaatgaggtaaaacaatccaataa---catatatctacagccatgcataatggaat |
156 |
Q |
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| T |
44187209 |
tatattttattagttgcctacttctgatcaatgaggtaaaacaagccaacaacagcatatatctacagccatgcataatggaat |
44187126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 4878980 - 4878920
Alignment:
| Q |
102 |
atcaatgaggtaaaacaatccaataacatatatctacagccatgcataatggaattgcagt |
162 |
Q |
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| T |
4878980 |
atcaatgaggtaaaacaagccaacaacatatacctacagccatgcataatggaactgcagt |
4878920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4879052 - 4878991
Alignment:
| Q |
1 |
ttcttgagttgtggactgaatattctattaca--tctaaacaaaattctgcgacaaaacata |
60 |
Q |
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| T |
4879052 |
ttcttgagttgtggaccgaatatcttattacaattctaaacaaaattcttctacaaaacata |
4878991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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