View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_92 (Length: 221)
Name: NF13040_high_92
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_92 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 53453785 - 53453565
Alignment:
| Q |
1 |
acaccttttggtaaaccagaagttcctgaagaaaacggtaacgcaaccacgtcgtttgggtttattttaacttctggtaattcgttttcatcagcatttg |
100 |
Q |
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| T |
53453785 |
acaccttttggtaaaccagaagttcctgaagaaaacggtaacgcaactacatcgtttgggtttatttttacttctggtaattcgttttcatcagcatttg |
53453686 |
T |
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| Q |
101 |
ttaaagcagaaaagttcacaacatgttcatcttcctccggtgatgaatcaatgcacacgattttgatgtcgttgagttttgcgaaatcattgattttatt |
200 |
Q |
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| T |
53453685 |
ttaaaacagaaaaatccacaacattttcatcttcctccggtgatgaatcaatgcacacgattttgatgtcgatgagttttgcgaaatcgttgattttatt |
53453586 |
T |
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| Q |
201 |
gagatacgcggattgtgttat |
221 |
Q |
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|||||| ||||||||||||| |
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| T |
53453585 |
gagatatacggattgtgttat |
53453565 |
T |
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