View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_high_96 (Length: 213)
Name: NF13040_high_96
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_high_96 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 37186402 - 37186592
Alignment:
| Q |
9 |
acatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataagtctttgtctttgctgataattcaaggtatccttcaa |
108 |
Q |
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| T |
37186402 |
acatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataggtctttgtctttgctgataattcaaggtatccttcaa |
37186501 |
T |
|
| Q |
109 |
catgatcctgcacaatcaaaacacaaatttgaaaacttattgctttttctttcctccttcaaatcaatgtgatcatactatattttcaaat |
199 |
Q |
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| T |
37186502 |
catgatcctgcacaatcaaaacacaaatttgaaaacttattgctttttctttcctccttcaaatcaatgtgatcatactatattttcaaat |
37186592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 17124791 - 17124686
Alignment:
| Q |
9 |
acatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataagtctttgtctttgctgataattcaaggtatccttcaa |
108 |
Q |
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||||| ||||||||||||| ||| || ||||||||||| ||| | |||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
17124791 |
acatcgtcatcaactttgacataaaaatcagcatcccataagctcacagcagtggcaaagtatgtctttgtctttgctgacaattcaaggtatccttcaa |
17124692 |
T |
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| Q |
109 |
catgat |
114 |
Q |
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|||||| |
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| T |
17124691 |
catgat |
17124686 |
T |
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