View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_low_10 (Length: 691)

Name: NF13040_low_10
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_low_10
NF13040_low_10
[»] chr5 (1 HSPs)
chr5 (11-672)||(29676118-29676778)


Alignment Details
Target: chr5 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 11 - 672
Target Start/End: Complemental strand, 29676778 - 29676118
Alignment:
Q  11 cacagacacgtcgacactactaatgccaaaaacataagccacatacagacaccgatacataaaaaataaaccaaacattttatgattaaactactaacga 110  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29676778 cacagacacgttgacactactaatgccaaaaacataaggcacatacagacaccgatacataaaaaataaaccaaatattttatgattaaactactaacga 29676679  T
Q  111 gctcatgcgtttgcatagtcctgagaaaaatgtagcggaaaacagatttgtgaaattctgccacatgtcagtagaaattaggaaaatactatttataaga 210  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29676678 gctcatgcgtttgcatagtcctgagaaaaatgt-gctgaaaacagatgtatgaaattctgctacatgtcagtagaaattaggaaaatactatttataaga 29676580  T
Q  211 tagatagagatcaaagaggatacgcacgctgagagttcctggcctcccccgttaaatccagtactccaaaagattccagcaggtttgcctgcgagtgctt 310  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676579 tagatagggatcaaagaggatactcacgctgagagttcctggcctcccccgttaaatccagtactccaaaagattccagcaggtttgcctgcgagtgctt 29676480  T
Q  311 gagacgcccacaactctccagtagcgtcaaagaaggccttgagctggcttggcatcataccaaaacgtgaaggaaaaccaaatatcaaagcatcagcctc 410  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676479 gagacgcccacaactctccagtagcgtcaaagaatgccttgagctggctaggcatcataccaaaacgtgaaggaaaaccaaatatcaaagcatcagcctc 29676380  T
Q  411 cacaagttgttccggcttaatgtcagctacatcatctggtttaggaggtgccttcatcttttccaatattcgatccgaaagaatttcaggtacctgttat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676379 cacaagttgttccggcttaatgtcagctacatcatctggtttaggaggtgccttcatcttttccaatattcgatccgaaagaatttcaggtacctgttat 29676280  T
Q  511 cagcaaattcaaaccaaactactaactcagactaaaataatccgaattacacgagaatcaaatattttcttttacaatagtagtacaacacattcttaat 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29676279 cagcaaattcaaaccaaactactaactcagactaaaataatccgaattacacaagaatcaaatattttcttttacaatagtagtacaacacattcttaat 29676180  T
Q  611 gatagttgaaaaattaccctccaaagtgttgcttcaacaccttcaattgaagctgccccctt 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29676179 gatagttgaaaaattaccctccaaagtgttgcttcaacaccttcaatcgaagctgccccctt 29676118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University