View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_100 (Length: 215)
Name: NF13040_low_100
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_100 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27436829 - 27437043
Alignment:
| Q |
1 |
aatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagttgcaataaacgcggtatacatgcagacata |
100 |
Q |
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| T |
27436829 |
aatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagctgcaataaacgcggtatacatgcagacata |
27436928 |
T |
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| Q |
101 |
cttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagctggagctgatatgaaggag |
200 |
Q |
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| T |
27436929 |
cgtgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagctggagctgatatgaaggag |
27437028 |
T |
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| Q |
201 |
aaggagaagccgtat |
215 |
Q |
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||||||||||||||| |
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| T |
27437029 |
aaggagaagccgtat |
27437043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27945321 - 27945535
Alignment:
| Q |
1 |
aatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagttgcaataaacgcggtatacatgcagacata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27945321 |
aatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagctgcaataaacgcggtatacatgcagacata |
27945420 |
T |
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| Q |
101 |
cttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagctggagctgatatgaaggag |
200 |
Q |
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| T |
27945421 |
cgtgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagctggagctgatatgaaggag |
27945520 |
T |
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| Q |
201 |
aaggagaagccgtat |
215 |
Q |
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| T |
27945521 |
aaggagaagccgtat |
27945535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 27549389 - 27549207
Alignment:
| Q |
1 |
aatttgaattgtaattattattactattatttt-cttataattgtctaattcaaatgttcacaaatgcagttgcaataaacgcggtatacatgcagacat |
99 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |
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| T |
27549389 |
aatttgaattataattattattactattattttacttataattatctaattcaaatgttcacaaatgcagttgccataaatgcggcatacatgcagacat |
27549290 |
T |
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| Q |
100 |
acttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagct |
182 |
Q |
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|| ||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |
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| T |
27549289 |
acgtgggaggtgtatcgtgcccatacacttgtacaaggaggctggatcatggagttttgctggtggggtacggttctggagct |
27549207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 26766209 - 26766337
Alignment:
| Q |
53 |
aatgttcacaaatgcagttgcaataaacgcggtatacatgcagacatacttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttgga |
152 |
Q |
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||||| ||||||||||||||| | || || ||||| ||||| || ||| | |||||| ||||||| ||||||||||| ||| ||| || |||| |||| |
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| T |
26766209 |
aatgtgcacaaatgcagttgccttgaatgccgtatatatgcaaacgtacgttggaggagtatcatgtccatacatatgctcaaagagactagatcatgga |
26766308 |
T |
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| Q |
153 |
gttttgcttgtggggtatggttctggagc |
181 |
Q |
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|| || || ||||| ||||| |||||||| |
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| T |
26766309 |
gtgttactggtgggatatggatctggagc |
26766337 |
T |
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