View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_low_101 (Length: 215)

Name: NF13040_low_101
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_low_101
NF13040_low_101
[»] chr4 (5 HSPs)
chr4 (1-208)||(12718029-12718237)
chr4 (1-79)||(11197106-11197184)
chr4 (1-76)||(10396305-10396374)
chr4 (1-132)||(34946311-34946440)
chr4 (7-79)||(11307493-11307566)
[»] chr7 (3 HSPs)
chr7 (1-79)||(21416341-21416419)
chr7 (1-79)||(23568911-23568990)
chr7 (1-79)||(27597863-27597943)
[»] chr8 (2 HSPs)
chr8 (1-79)||(3671051-3671129)
chr8 (7-51)||(2954431-2954475)
[»] chr2 (4 HSPs)
chr2 (15-79)||(13792227-13792292)
chr2 (15-79)||(28226537-28226601)
chr2 (15-77)||(13792417-13792481)
chr2 (10-79)||(35414351-35414420)
[»] chr1 (3 HSPs)
chr1 (7-79)||(34666015-34666088)
chr1 (7-51)||(31973541-31973585)
chr1 (1-76)||(47159182-47159258)
[»] chr3 (2 HSPs)
chr3 (1-68)||(16143327-16143396)
chr3 (7-81)||(40196027-40196101)
[»] chr5 (3 HSPs)
chr5 (1-82)||(36389192-36389272)
chr5 (27-79)||(13112418-13112470)
chr5 (19-77)||(13112875-13112933)
[»] chr6 (1 HSPs)
chr6 (7-79)||(7301506-7301579)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 12718029 - 12718237
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttggggagactaaaagcgcttagaacggc 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||| | ||||    
T  12718029 ctaggatgatccatactaggatcctgctcccactcccccagcaagcctaactaggctctaataccaatttattggggagactaagagcgcttaaagcggc 12718128  T
Q  101 actgagctaaacgtctagaaccaactaagag-attacaggagatattctaacagctagaatactttcaaaaccggaaaagaatagagaattatagaagat 199  Q
    | ||||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12718129 aatgagctaaacgtctagaaccaactaagagaattatagaagatattctaaccgctagaatactttcaaaaccggaaaagaatagagaattatagaagat 12718228  T
Q  200 attaatttt 208  Q
    |||||||||    
T  12718229 attaatttt 12718237  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11197184 - 11197106
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttggggag 79  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  11197184 ctaggatgatccacaccaggatcccgctcccactcccccagcaagcctaactaggctctgataccagtttgtttgggag 11197106  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10396374 - 10396305
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttggg 76  Q
    ||||||||||||||||||||||||      ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  10396374 ctaggatgatccacactaggatcc------cactcccccagaaagcctaactaggctctaatgccagtttgttggg 10396305  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 34946311 - 34946440
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttggggagacta-aaagcgcttagaacgg 99  Q
    ||||||||||||| |||| |||||   ||||||||||||||||| |||||| || |||| |||||   ||||||||||| |||  |||||||| || |||    
T  34946311 ctaggatgatccaaactatgatcccagtcccactcccccagcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgcttggagcgg 34946407  T
Q  100 cactgagctaaacgtctagaaccaactaagaga 132  Q
    || |  ||||||||||||| ||| |||||||||    
T  34946408 caataggctaaacgtctaggacccactaagaga 34946440  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 11307493 - 11307566
Alignment:
Q  7 tgatccacactaggatcctgctcccactcccccagcaagcctaactaga-ctctaataccagtttgttggggag 79  Q
    ||||||||||||||| ||  ||||| | |||||| |||||||||| ||| || | |||||||||||||||||||    
T  11307493 tgatccacactaggaacccactcccgcacccccatcaagcctaaccagagctatgataccagtttgttggggag 11307566  T

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Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 21416341 - 21416419
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttggggag 79  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  21416341 ctaggatgatccacactaggatcccgctcccactcccccagcaagcctaactaggctctgataccaatttgttggggag 21416419  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 23568911 - 23568990
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactcccccagc-aagcctaactagactctaataccagtttgttggggag 79  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || || | |||||||||||||||||||    
T  23568911 ctaggatgatccacactaggatcctgctcccactcccccagcaaagcctaaccaggctatgataccagtttgttggggag 23568990  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 27597943 - 27597863
Alignment:
Q  1 ctaggatgatccacactaggatcct--gctcccactcccccagcaagcctaactagactctaataccagtttgttggggag 79  Q
    |||||||||||||||||||| |||   |||||||||||||||||||||||||  || |||| |||||||||| ||||||||    
T  27597943 ctaggatgatccacactagggtcccccgctcccactcccccagcaagcctaatcaggctctgataccagtttattggggag 27597863  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 3671051 - 3671129
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttggggag 79  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||| |||||| ||||||||||||    
T  3671051 ctaggacgatccacactaggatcccgctcccactcccccagcaagcctagccagactctgataccaatttgttggggag 3671129  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 2954431 - 2954475
Alignment:
Q  7 tgatccacactaggatcctgctcccactcccccagcaagcctaac 51  Q
    ||||||||||||||||| |||||||||||||||| | ||||||||    
T  2954431 tgatccacactaggatcttgctcccactcccccaccgagcctaac 2954475  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 13792227 - 13792292
Alignment:
Q  15 actaggatcctgctcccactcccc-cagcaagcctaactagactctaataccagtttgttggggag 79  Q
    |||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  13792227 actaggatcccgctcccactccccccagcaagcctaactaggctctgataccagtttgttggggag 13792292  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 28226601 - 28226537
Alignment:
Q  15 actaggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttggggag 79  Q
    |||||||||| |||||||||| ||||||||| |||||||| |||| |||||||||||||||||||    
T  28226601 actaggatcccgctcccactctcccagcaagtctaactaggctctgataccagtttgttggggag 28226537  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 13792417 - 13792481
Alignment:
Q  15 actaggatcctgctcccactccccc--agcaagcctaactagactctaataccagtttgttgggg 77  Q
    |||| ||||| ||| ||||||||||  ||||||||||||||| |||| |||||||||||||||||    
T  13792417 actaagatcccgcttccactcccccctagcaagcctaactaggctctgataccagtttgttgggg 13792481  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 35414351 - 35414420
Alignment:
Q  10 tccacactaggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttggggag 79  Q
    ||||||||||||||| | || |||||||  |||||||||||| ||||||| ||||||  || ||||||||    
T  35414351 tccacactaggatcccgttcacactcccttagcaagcctaacaagactctgataccaaattattggggag 35414420  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 34666015 - 34666088
Alignment:
Q  7 tgatccacactaggatcctgctcccactcccccagcaagcctaacta-gactctaataccagtttgttggggag 79  Q
    |||||||||||||||||| ||||||||  ||||||| |||||||| | |||||| |||||||||||||||||||    
T  34666015 tgatccacactaggatcccgctcccaccaccccagcgagcctaaccaggactctgataccagtttgttggggag 34666088  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 31973541 - 31973585
Alignment:
Q  7 tgatccacactaggatcctgctcccactcccccagcaagcctaac 51  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||||    
T  31973541 tgatccacactaggatcccgctcccactcctccatcgagcctaac 31973585  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47159182 - 47159258
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactcccccagcaagcctaacta-gactctaataccagtttgttggg 76  Q
    ||||||||||||||||||||||||  ||| ||||| | || | |||||||| | |||||| |||||| |||||||||    
T  47159182 ctaggatgatccacactaggatcccactcacactctctcatcgagcctaaccaggactctgataccaatttgttggg 47159258  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16143396 - 16143327
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactccc--ccagcaagcctaactagactctaataccagt 68  Q
    ||||||||||||||||||| |||| ||||||||||||  |||||||||||||| || |||| ||||||||    
T  16143396 ctaggatgatccacactagaatcccgctcccactcccgtccagcaagcctaaccaggctctgataccagt 16143327  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 40196027 - 40196101
Alignment:
Q  7 tgatccacactaggatcctgctcccactcccccagcaagcctaactaga-ctctaataccagtttgttggggagac 81  Q
    |||||||||||||||||| |||||| || ||||| |||||||||| ||| |||| ||||||| |||||||||||||    
T  40196027 tgatccacactaggatcccgctcccgctaccccaccaagcctaaccagagctctgataccag-ttgttggggagac 40196101  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 36389192 - 36389272
Alignment:
Q  1 ctaggatgatccacactaggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttggggagact 82  Q
    |||||| |||||| |||||||| | ||||||||||||||||||||||||| ||   ||| |||||||||||||| |||||||    
T  36389192 ctaggacgatcca-actaggattccgctcccactcccccagcaagcctaattatgttctgataccagtttgttgaggagact 36389272  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 13112470 - 13112418
Alignment:
Q  27 ctcccactcccccagcaagcctaactagactctaataccagtttgttggggag 79  Q
    |||||||||||||| |||||||||| |||||| |||| |||||||||||||||    
T  13112470 ctcccactcccccaacaagcctaaccagactcaaatatcagtttgttggggag 13112418  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 13112933 - 13112875
Alignment:
Q  19 ggatcctgctcccactcccccagcaagcctaactagactctaataccagtttgttgggg 77  Q
    |||||| |||| |||| |||||||||||||||  || |||| |||||||||||||||||    
T  13112933 ggatcccgctctcacttccccagcaagcctaagaaggctctgataccagtttgttgggg 13112875  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 7301506 - 7301579
Alignment:
Q  7 tgatccacactaggatcctgctcccactcccccagcaagcctaacta-gactctaataccagtttgttggggag 79  Q
    ||||||||| |||||||| ||||||||||||||| | |||||||| | | |||| |||| ||||||||||||||    
T  7301506 tgatccacattaggatcccgctcccactcccccatcgagcctaaccatggctctgatactagtttgttggggag 7301579  T

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