View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_11 (Length: 665)
Name: NF13040_low_11
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 37279954 - 37280238
Alignment:
| Q |
1 |
gtcagagctgcagatcagaacctgcatctacaaatttcaagcttatgacaagtaaaagaaattactgtaatttctggatttaaaagggtaaaagaaatta |
100 |
Q |
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| T |
37279954 |
gtcagagctgcagatcagaacctgcatctacaaatttcaagcttatgacaagtaaaagaaattactgtaatttctggatttaaaagggtaaaagaaatta |
37280053 |
T |
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| Q |
101 |
ttgtatattgtattgaccataataagtttatgacaagtaacaaattacttcaaatttttatcatactatactcgacgattataaagtctagctcaagcca |
200 |
Q |
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| T |
37280054 |
ttgtatattgtattgaccataataagtttatgacaagtaacaaattacttcaaatttttatcatactatactcgacgattataaagtctagctcaagcca |
37280153 |
T |
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| Q |
201 |
acttttttccgcctcaatctacgatatgttgtatcattaggtttgtagaggatccaaatatttgtttactcataatagaatttttag |
287 |
Q |
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| T |
37280154 |
acttttttccgcctcaatctacgatatgttgtatcattaggtttgtagaggatccaaatatt--tttactcagaatagaatttttag |
37280238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 333 - 646
Target Start/End: Original strand, 37280259 - 37280572
Alignment:
| Q |
333 |
atgtcgtttaatt-aagtaaatgcatttcatttggtttggatcttaaataattgaatcgaatgctgaaatttagatctaaccagtccattccctctttag |
431 |
Q |
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| T |
37280259 |
atgtcgtttaatttaagtaaatgcatttcatttggcttggatcttaaataattgaatcgaatgctgaaatttagatctaaccagtctattccctctttag |
37280358 |
T |
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| Q |
432 |
acaacaacaggaaaacccaaattttttattttgagcaaatttctggactataactaaccataagcatttctagcnnnnnnnctaactataaccatatatt |
531 |
Q |
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| T |
37280359 |
acaacaacaagaaaacccaaattttttattttgagcaaatttctg-actataactaaccataagcatttctagcaaaaaaactaactataaccatatatt |
37280457 |
T |
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| Q |
532 |
gttgatgtatacttccataaatagttgaaatgtgaggtgtaagagtgtttgataccaatgattttcctcatgttttggaatacctttgaactgtaataat |
631 |
Q |
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| T |
37280458 |
gttgatgtatacttccataaatagttaaaatgtgaggtgtaagagtgtttgataccaatgattttcctcatgttttggaatacctttgaactgtaataat |
37280557 |
T |
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| Q |
632 |
tttatgtatattatg |
646 |
Q |
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| T |
37280558 |
tttatgtatattatg |
37280572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 565 - 645
Target Start/End: Original strand, 37276671 - 37276751
Alignment:
| Q |
565 |
gaggtgtaagagtgtttgataccaatgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattat |
645 |
Q |
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| T |
37276671 |
gaggtgtaagaatgtttgataccaacgactttcctcacacttcggaatccctttgaactattataattttatgtatattat |
37276751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 503
Target Start/End: Original strand, 37276562 - 37276635
Alignment:
| Q |
427 |
tttagacaacaacaggaaaacccaaattttttattttgagcaaatttctggactataactaaccataagcatttcta |
503 |
Q |
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| T |
37276562 |
tttagataataacatgaagacccaaatttt--attttgagcaaatttct-cactataactaaccataactatttcta |
37276635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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