View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_12 (Length: 625)
Name: NF13040_low_12
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 13 - 606
Target Start/End: Complemental strand, 23324244 - 23323651
Alignment:
| Q |
13 |
gagatgaagctaaaaatcagctgcaaaaactaatgaacaacctaagtccaatccatttccaagacaagttcatttctggattccaacaagaaaatcctct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324244 |
gagatgaagctaaaaatcagctgcaaaaactaatgaacaacccaagtccaatccatttccaagacaagttcatttctggattccaacaagaaaatcctct |
23324145 |
T |
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| Q |
113 |
aatgtttcactcttcaaaccctagcattacagaatctagcagtctctcacacggttctccaccggtcgattcattctttgaaactgtttcttcacctgag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324144 |
aatgtttcactcttcaaaccctagcattacagaatctagcagtctctcacacggttctccaccggtcgattcattctttgaaactgtttcttcacctgag |
23324045 |
T |
|
| Q |
213 |
ttttcaaacaccaacatggcctatctcaaccatcatcaaaatcaacacttcaattatttgagggtgcccagtgaaaagccagtttctgatcatggaactg |
312 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324044 |
ttttcaaacaccaacatggcctatctcaatcatcatcaaaatcaacacttcaattatttgagggtgcccagtgaaaagccagtttctgatcatggaactg |
23323945 |
T |
|
| Q |
313 |
ttgctatagattctattgctaaagaaaaagttttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttcaaactattctact |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23323944 |
ttgctatagattctattgctaaagaaaaagttttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttcaaactattctact |
23323845 |
T |
|
| Q |
413 |
tgctggaccacttcctacttggagcaatccacctcctttgaatgatattcaagttccacctttgaacatcaaagtgtatgataatgatgctgctataata |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23323844 |
tgctggaccacttcctacttggagcaatccacctcctttgaatgatattcaagttccacccttgaacatcaaagtgtatgataatgatgctgctataata |
23323745 |
T |
|
| Q |
513 |
atcgatccggtttcttttccagctatgccgaagttttcttcaaatgttacctcaacttgttcagcttcttcaatgcttaactttgctggtaatc |
606 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23323744 |
atcgacccggtttcttttccagctatgccgaagttttcttcaaatgttacctcaacttgttcagcttcttcaatgcttaactttgctggtaatc |
23323651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 21010438 - 21010360
Alignment:
| Q |
344 |
tttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttcaaactattctacttgctggacca |
422 |
Q |
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||||||| |||| ||||||||||||||||| ||||| | ||||||||||||||||| || || ||||||| |||||| |
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| T |
21010438 |
tttgcctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttcagacccttttacttgcaggacca |
21010360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 453
Target Start/End: Complemental strand, 41159943 - 41159811
Alignment:
| Q |
321 |
gattctattgctaaagaaaaagttttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttcaaactattctacttgctggac |
420 |
Q |
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|||||| |||| | || |||||| || || ||||| ||||||||| | | ||||| ||| |||||||||| |||||||||| | || | ||| | || | |
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| T |
41159943 |
gattctcttgcaagaggaaaagtgttaccacaaaaaggtaaacttcttgatgctgtaattaatgctggtccattgcttcaaaatcttgttctttccgggc |
41159844 |
T |
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| Q |
421 |
cacttcctacttggagcaatccacctcctttga |
453 |
Q |
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||||||||||||||| |||||||||||||||| |
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| T |
41159843 |
cacttcctacttggaaaaatccacctcctttga |
41159811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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