View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_14 (Length: 618)
Name: NF13040_low_14
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 8 - 602
Target Start/End: Original strand, 48438785 - 48439379
Alignment:
| Q |
8 |
tgagatgaaccagcaaattgtcaataccttctctatatgatctttgttggattgggtacatcacaataatctcaatcaacattcctactgcaatggagca |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48438785 |
tgagaagaaccagcaaattgtcaataccttctctatatgatctttgttggattgggtacatcacaataatctcaatcaacattcctactgcaatggagca |
48438884 |
T |
|
| Q |
108 |
gatacagaagtttccaattgatgtcaacacctaatagaatccaatcaaataatatccaaagattagtccatatagtctagagtcgtcgaataaatcaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48438885 |
gatacagaagtttccaattgatgtcaacacctaatagaatccaatcaaataatatccaaagattagtccatatagtctagagtcgtcgaataaatcaaat |
48438984 |
T |
|
| Q |
208 |
taagaaaacacttgctagtaacttatacaaaactnnnnnnnnnncacaaaagtgtaccttttggaagtgaccaacattgttagtgctatcaacaaggtga |
307 |
Q |
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| T |
48438985 |
taagaaaacacttgctagtaacttatacaaaactaaaaaaaaaacacaaaagtgtaccttttggaagtgaccaacattgttagtgctatcaacaaggtga |
48439084 |
T |
|
| Q |
308 |
gcagcctttccaaagaaggtatgaacaccagtggcgatgacaacagcttcaatctcaccttgtttgcaggtggaaccagagaagacttcctcaccagggt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48439085 |
gcagcctttccaaagaaggtatgaacaccagtggcgatgacaacagcttcaatctcaccttgtttgcaggtggaaccagagaagacttcatcaccagggt |
48439184 |
T |
|
| Q |
408 |
tcttggtaactggaagtgactcaccagtgagtgcagattggtcaatcttaagggcatctccttccaagaggcgagcatcagctgggacaatatctcccag |
507 |
Q |
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| T |
48439185 |
tcttggtaactggaagtgactcaccagtgagtgcagattggtcaatcttaagggcatctccttccaagaggcgagcatcagctgggacaatgtctcccag |
48439284 |
T |
|
| Q |
508 |
ctttatgctcactaaatctcctggcaccaaaattgccgcctcttgttcagtccattttccatccctcaacacctacaagtttgttaattaattat |
602 |
Q |
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| T |
48439285 |
ctttatgctcactaaatctcctggcactaaaattgccgcctcttgttcagtccattttccatccctcaacacctacaagtttgttaattaattat |
48439379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 262 - 444
Target Start/End: Complemental strand, 44530594 - 44530412
Alignment:
| Q |
262 |
taccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttccaaagaaggtatgaacaccagtggcgatgacaacagcttcaatc |
361 |
Q |
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| T |
44530594 |
tacctgttggaagtgaccaacttggtttgtagtatctacaaggtgagcagctttaccgaaaaaggtatgaacaccagtagctatgaccacgccttcgatc |
44530495 |
T |
|
| Q |
362 |
tcaccttgtttgcaggtggaaccagagaagacttcctcaccagggttcttggtaactggaagtgactcaccagtgagtgcaga |
444 |
Q |
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|| |||||||||||||| |||||||| | || | ||||||||| ||| || |||||||| |||||||| ||||||||||| |
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| T |
44530494 |
tctccttgtttgcaggtagaaccagaatacacaccatcaccagggccctttgtcactggaagggactcacctgtgagtgcaga |
44530412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 8e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 262 - 585
Target Start/End: Original strand, 21982572 - 21982895
Alignment:
| Q |
262 |
taccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttccaaagaaggtatgaacaccagtggcgatgacaacagcttcaatc |
361 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||||| ||| || || |
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| T |
21982572 |
taccttttggaagtgaccaacattgttggtgctatcaacaaggtgtgcagccttcccaaagaaggtgtggacaccagtggcaatgacaatagcctcgatt |
21982671 |
T |
|
| Q |
362 |
tcaccttgtttgcaggtggaaccagagaagacttcctcaccagggttcttggtaactggaagtgactcaccagtgagtgcagattggtcaatcttaaggg |
461 |
Q |
| |
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|||||||| ||||| || |||||||||||||| || | |||||||||| | || ||||| | ||||||||||| || ||||| ||||||||||| | || |
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| T |
21982672 |
tcaccttgcttgcaagttgaaccagagaagacctcttgaccagggttccttgttactggcaaggactcaccagtaagggcagactggtcaatctttaagg |
21982771 |
T |
|
| Q |
462 |
catctccttccaagaggcgagcatcagctgggacaatatctcccagctttatgctcactaaatctcctggcaccaaaattgccgcctcttgttcagtcca |
561 |
Q |
| |
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|||||||||||| || || ||||||||||||||||| ||||||| ||| || || | | |||||| |||||||||||| | |||||||| ||| |||| |
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| T |
21982772 |
gatctccttccaaaagacgggcatcagctgggacaatgtctcccaacttgatactgatcacatctcccggcaccaaaatttctgcctcttgctcactcca |
21982871 |
T |
|
| Q |
562 |
ttttccatccctcaacacctacaa |
585 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
21982872 |
ttttccatccctcaacacctacaa |
21982895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 261 - 575
Target Start/End: Original strand, 45199478 - 45199792
Alignment:
| Q |
261 |
gtaccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttccaaagaaggtatgaacaccagtggcgatgacaacagcttcaat |
360 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| || || | ||||||||||| ||||||||||| || |||||||| || || |||| || || | |
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| T |
45199478 |
gtaccttttggaaatgaccaacttggttagtgctgtcgaccaaatgagcagccttaccaaagaaggtgtgcacaccagtagcaattacaatcgcctcgag |
45199577 |
T |
|
| Q |
361 |
ctcaccttg-tttgcaggtggaaccagagaagacttcctcaccagggttcttggtaactggaagtgactcaccagtgagtgcagattggtcaatcttaag |
459 |
Q |
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|| ||||| ||| ||| | || |||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||| |
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| T |
45199578 |
ttctccttgctttacag-tagagccagagaagacttcatcaccagggttcttggttgttggcaaggactcaccagtgagtgcagattgatcaatcttaag |
45199676 |
T |
|
| Q |
460 |
ggcatctccttccaagaggcgagcatcagctgggacaatatctcccagctttatgctcactaaatctcctggcaccaaaattgccgcctcttgttcagtc |
559 |
Q |
| |
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| |||||| ||||| || ||||| || ||||| || || ||||| | || ||||| | || ||||||||| ||||| || || |||||||| |||||| |
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| T |
45199677 |
aggatctccgtccaaaagacgagcgtcggctggaacgatgtctcctaatttgatgctgattatatctcctggtaccaatatagcagcctcttgctcagtc |
45199776 |
T |
|
| Q |
560 |
cattttccatccctca |
575 |
Q |
| |
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|| ||||||| |||| |
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| T |
45199777 |
caccttccatctctca |
45199792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 21982173 - 21982307
Alignment:
| Q |
8 |
tgagatgaaccagcaaattgtcaataccttctctatatgatctttgttggattgggtacatcacaataatctcaatcaacattcctactgcaatggagca |
107 |
Q |
| |
|
||||| |||||| ||| ||||||||||| ||||| || | ||| | |||||| || ||||||||||| || ||||||| |||||| || ||||| ||||| |
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| T |
21982173 |
tgagaagaaccaacaagttgtcaataccatctctgtaagctctattttggatgggatacatcacaatgatttcaatcaccattcccacagcaattgagca |
21982272 |
T |
|
| Q |
108 |
gatacagaagtttccaattgatgtcaacacctaat |
142 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||| |
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| T |
21982273 |
gatacagaagttaccaatggatgtcaacacctaat |
21982307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 3152644 - 3152574
Alignment:
| Q |
305 |
tgagcagcctttccaaagaaggtatgaacaccagtggcgatgacaacagcttcaatctcaccttgtttgca |
375 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||| |
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| T |
3152644 |
tgagcagccttgccaaagaaggtatgaactccagtcgcaataacaacagcttctatctctccttgcttgca |
3152574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 482 - 562
Target Start/End: Original strand, 1498827 - 1498907
Alignment:
| Q |
482 |
gcatcagctgggacaatatctcccagctttatgctcactaaatctcctggcaccaaaattgccgcctcttgttcagtccat |
562 |
Q |
| |
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||||||||||| ||||||||||| | ||| ||||| | || |||||||| || |||||||| || ||||||||| ||||| |
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| T |
1498827 |
gcatcagctggaacaatatctcctaacttgatgctgattatgtctcctggtactaaaattgcagcatcttgttcactccat |
1498907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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