View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_15 (Length: 589)
Name: NF13040_low_15
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 32764348 - 32764874
Alignment:
| Q |
1 |
gagacaaaatccgggagtgtataagcaattagttaagttgagaaatgcagagaatgaaactaaatattgtgtatgatacctgaatatatagttaaggaca |
100 |
Q |
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| T |
32764348 |
gagacaaaatccgggagtgtataaacaattagttaagttgagaaatgcagagaatgaaactaaatattgtgtatgatacctgaatatatagttaaggaca |
32764447 |
T |
|
| Q |
101 |
aatatttccaaagtcatgcgccctaattctgtgagacacctttcatcatgctcaatacaatctttgtcgaaatcctccccagagtgtccattctgcaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764448 |
aatatttccaaagtcatgcgccctaattctgtgagacacctttcatcatgctcaatacaatctttgtcgaaatcctccccagagtgtccattctgcaaga |
32764547 |
T |
|
| Q |
201 |
acacgggaaacaggtccttagcaatcaaaaggatttcagagcccttttggcaattccttgttactgaagataccattttcagatacctaatatatgcttc |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
32764548 |
acatgggaaacaggtccttagcaatcaaaaggatttcagagcccttttggcacttccttgttaccgaagatacca-tttcagatacctaatatatgcttc |
32764646 |
T |
|
| Q |
301 |
aaataccagcaggataggtttgtttctttctaaattatatatgtaaaaatgtacgctatcattaatttacatctacgagatatggtaaagnnnnnnnngg |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| || |
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| T |
32764647 |
aaatacgagcaggataggtttgtttctttctaaattatacatgtaaaaatgtacactatcattaattaacatctacgagatatggtaaag-aaaaaaagg |
32764745 |
T |
|
| Q |
401 |
caacacggcct-aaatgaattcatggttgaaagggaatatttcagttagtggtgagcaaatactaaaaaattcaatatcaagctatcaagcatatgcagc |
499 |
Q |
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| T |
32764746 |
aaacacggcctaaaatgaattca-gttggaaagggaatatttcagttagtggtgagcaaatactaaaaaattcaatatcaagctatcaagcatgtgcaac |
32764844 |
T |
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| Q |
500 |
tttagaataactaactaatccatatttgaaccc |
532 |
Q |
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| T |
32764845 |
tttagaata---aactaatccatatttgaaccc |
32764874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 66 - 235
Target Start/End: Original strand, 32752939 - 32753108
Alignment:
| Q |
66 |
attgtgtatgatacctgaatatatagttaaggacaaatatttccaaagtcatgcgccctaattctgtgagacacctttcatcatgctcaatacaatcttt |
165 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| ||||||||| || ||||| ||||||| |
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| T |
32752939 |
attgtgtatgctacctgaatatatgagcaaggacaaatatttccaaagtcctacgccctaattctgtgagacgcctttcatcgcgcacaatagaatcttt |
32753038 |
T |
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| Q |
166 |
gtcgaaatcctccccagagtgtccattctgcaagaacacgggaaac-aggtccttagcaatcaaaaggatt |
235 |
Q |
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| T |
32753039 |
attgaaatcctcaccagagtttacatcctacaa-aacacaagaaacggggtacttagcaatcaaaaggatt |
32753108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 402 - 565
Target Start/End: Original strand, 32753330 - 32753494
Alignment:
| Q |
402 |
aacacggcctaaat-gaattcatggttgaaagggaatatttcagttagtggtgagcaaatactaaaaaattcaatatcaagctatcaagcatatgcagct |
500 |
Q |
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|||||||||||||| ||||| ||| | |||||||||||||| |||||||| || |||||| |||||||| || |||||||||||||| ||| ||| || |
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| T |
32753330 |
aacacggcctaaattgaattaatgttggaaagggaatatttaagttagtgttgtacaaatagtaaaaaatgcactatcaagctatcaaacatgggcaact |
32753429 |
T |
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| Q |
501 |
ttagaataactaactaatccatatttgaaccc-gtaattgtttacaagggtgaaagattagttcct |
565 |
Q |
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||| ||||||||| ||||||||||||| |||| || | ||||||| || ||||| |||||||||| |
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| T |
32753430 |
ttaaaataactaa-taatccatatttgcacccaatattagtttacagggatgaaaaattagttcct |
32753494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 16777096 - 16776994
Alignment:
| Q |
94 |
aaggacaaatatttccaaagtcatgcgccctaattctgtgagacacctttcatcatgctcaatacaatctttgtcgaaatcctccccagagtgtccattc |
193 |
Q |
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||||||||||||||||| |||| | || || ||||||||||||| |||||||||| |||| ||| | ||||| | ||| || |||||||||| ||||| | |
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| T |
16777096 |
aaggacaaatatttccagagtcctacgacccaattctgtgagacgcctttcatcacgctctatagattctttattgaagtcatccccagagtttccatcc |
16776997 |
T |
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| Q |
194 |
tgc |
196 |
Q |
| |
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||| |
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| T |
16776996 |
tgc |
16776994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 367
Target Start/End: Original strand, 32753196 - 32753278
Alignment:
| Q |
280 |
cagatacctaatatatgcttcaaataccagcaggataggtttgtttctttctaaattatatatgtaaaaatgtacgctatcattaatt |
367 |
Q |
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|||||||||||||||||| |||| ||| ||| ||| |||||| ||||| ||||||||||||||||||| ||| |||||||||||| |
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| T |
32753196 |
cagatacctaatatatgc---aaat--cagtaggctagatttgttgctttcaaaattatatatgtaaaaatctacactatcattaatt |
32753278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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