View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_low_16 (Length: 575)

Name: NF13040_low_16
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_low_16
NF13040_low_16
[»] chr5 (14 HSPs)
chr5 (18-363)||(12466686-12467031)
chr5 (434-552)||(30085575-30085692)
chr5 (430-542)||(4944426-4944538)
chr5 (430-552)||(11617818-11617939)
chr5 (431-544)||(7505321-7505434)
chr5 (469-541)||(16596790-16596862)
chr5 (429-520)||(21521454-21521545)
chr5 (429-520)||(21532020-21532111)
chr5 (436-527)||(41484256-41484347)
chr5 (467-537)||(9161705-9161775)
chr5 (430-494)||(15024025-15024089)
chr5 (469-517)||(16921444-16921492)
chr5 (436-552)||(21018105-21018221)
chr5 (477-541)||(7506283-7506347)
[»] scaffold0022 (4 HSPs)
scaffold0022 (421-575)||(77208-77361)
scaffold0022 (421-575)||(43488-43640)
scaffold0022 (358-418)||(43385-43445)
scaffold0022 (358-418)||(77105-77165)
[»] chr2 (12 HSPs)
chr2 (430-543)||(17999006-17999119)
chr2 (429-542)||(28219680-28219793)
chr2 (429-552)||(10354833-10354956)
chr2 (434-552)||(28198551-28198668)
chr2 (430-544)||(22017713-22017827)
chr2 (429-553)||(23701623-23701745)
chr2 (405-541)||(8856016-8856152)
chr2 (429-541)||(7444439-7444549)
chr2 (430-553)||(44247008-44247129)
chr2 (475-541)||(12432863-12432928)
chr2 (471-536)||(822502-822567)
chr2 (444-544)||(14323012-14323111)
[»] chr4 (14 HSPs)
chr4 (430-541)||(50859398-50859509)
chr4 (429-544)||(31228994-31229109)
chr4 (368-541)||(41222915-41223087)
chr4 (436-552)||(35292627-35292743)
chr4 (430-553)||(48085196-48085317)
chr4 (434-552)||(13779919-13780036)
chr4 (434-552)||(35033210-35033327)
chr4 (431-542)||(4292009-4292119)
chr4 (430-543)||(21261095-21261208)
chr4 (436-538)||(25054764-25054866)
chr4 (430-539)||(46142604-46142713)
chr4 (506-569)||(42245420-42245482)
chr4 (437-535)||(30670599-30670697)
chr4 (505-553)||(41809231-41809278)
[»] chr3 (12 HSPs)
chr3 (446-544)||(24373430-24373528)
chr3 (429-552)||(39439291-39439414)
chr3 (429-555)||(42028645-42028770)
chr3 (429-543)||(44714005-44714119)
chr3 (434-552)||(25046047-25046164)
chr3 (434-552)||(32279033-32279150)
chr3 (471-541)||(35231281-35231351)
chr3 (441-542)||(40022935-40023036)
chr3 (478-557)||(27011857-27011934)
chr3 (475-541)||(2144599-2144664)
chr3 (435-472)||(42958275-42958312)
chr3 (431-483)||(23420500-23420552)
[»] scaffold0039 (1 HSPs)
scaffold0039 (429-541)||(57622-57734)
[»] chr8 (9 HSPs)
chr8 (429-541)||(34924052-34924164)
chr8 (436-554)||(38680456-38680575)
chr8 (429-542)||(29844924-29845036)
chr8 (475-541)||(14111691-14111757)
chr8 (475-541)||(20307721-20307787)
chr8 (475-541)||(21094354-21094420)
chr8 (506-575)||(30800940-30801011)
chr8 (475-541)||(44605891-44605957)
chr8 (462-541)||(42024777-42024854)
[»] chr7 (11 HSPs)
chr7 (438-553)||(12634045-12634159)
chr7 (434-552)||(19626090-19626207)
chr7 (469-541)||(5350342-5350414)
chr7 (430-541)||(19848426-19848532)
chr7 (430-543)||(36656832-36656945)
chr7 (429-527)||(3215211-3215309)
chr7 (475-541)||(28300778-28300843)
chr7 (505-542)||(260960-260997)
chr7 (431-539)||(23416339-23416447)
chr7 (478-553)||(23416580-23416653)
chr7 (476-541)||(45843753-45843818)
[»] chr1 (19 HSPs)
chr1 (429-543)||(34970797-34970911)
chr1 (438-554)||(41404807-41404922)
chr1 (429-552)||(48046974-48047097)
chr1 (429-524)||(49765566-49765661)
chr1 (430-542)||(15582249-15582361)
chr1 (429-543)||(8099671-8099784)
chr1 (436-544)||(41419074-41419183)
chr1 (471-541)||(35306265-35306335)
chr1 (430-542)||(7521707-7521819)
chr1 (430-541)||(32573691-32573802)
chr1 (464-542)||(50138929-50139006)
chr1 (430-541)||(2664249-2664359)
chr1 (480-552)||(40641432-40641504)
chr1 (475-541)||(29465520-29465585)
chr1 (477-535)||(47980618-47980675)
chr1 (504-541)||(50108489-50108526)
chr1 (475-523)||(23474462-23474509)
chr1 (431-499)||(45848597-45848665)
chr1 (429-473)||(50138450-50138494)
[»] chr6 (5 HSPs)
chr6 (440-538)||(29644618-29644716)
chr6 (427-538)||(7314234-7314345)
chr6 (435-539)||(13106518-13106622)
chr6 (482-544)||(6193088-6193149)
chr6 (475-541)||(10144760-10144825)
[»] scaffold0011 (1 HSPs)
scaffold0011 (440-542)||(8574-8675)
[»] scaffold0204 (1 HSPs)
scaffold0204 (429-540)||(11715-11826)
[»] scaffold0110 (1 HSPs)
scaffold0110 (478-553)||(37940-38013)
[»] scaffold0075 (1 HSPs)
scaffold0075 (475-541)||(12156-12221)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 12467031 - 12466686
Alignment:
Q  18 actttagaactactcgtgaaactatgaaattcatacccgttttgaaataacagcaaagtttgaattttgaacgaagatcaaaacaaatagagaagaaaga 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12467031 actttagaactactcgtgaaactatgaaagtcatacccgttttgaaataacagcaaagtttgaattttgaacgaagatcaaaacaaatagagaagaaaga 12466932  T
Q  118 aatcaaattgaatgaaacccacaaaaaataaccaacctagcatggcttcatcttttcgctcttctgttgaaatgtgatcataaggaaaatgaaaatcgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12466931 aatcaaattgaatgaaacccacaaaaaataaccaacctagcatggcttcatcttttcgctcttctgttgaaatgtgatcataaggaaaatgaaaatcgtc 12466832  T
Q  218 aacggaaacggcggcgttgctcatacctccgactccaccgcccacgaccgccgtcgttgaaattgatgaatgagccggtgatgaactgttcattgttcgt 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12466831 aacggaaacggcggcgttgctcatacctccgactccgccgcccacgaccgccgtcgttgaaattgatgaatgagccggtgatgaactgttcattgttcgt 12466732  T
Q  318 tcttcttttgaatggaacacgacaacgacgagaacagaatcttaag 363  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  12466731 tcttcttttgaatggaacacgacaacgacgagaacggaatcttaag 12466686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 434 - 552
Target Start/End: Complemental strand, 30085692 - 30085575
Alignment:
Q  434 ctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatt 533  Q
    |||||||||||||||||||| |||||||  |||||||||  || |||||||||||||||||  | |||||||||||| ||||||||||||||||||| ||    
T  30085692 ctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataacttttttatttcattt 30085593  T
Q  534 ttaccctttatcttaaaaa 552  Q
    |||||||||| ||||||||    
T  30085592 ttacccttta-cttaaaaa 30085575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 430 - 542
Target Start/End: Complemental strand, 4944538 - 4944426
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| |||||||||||||| ||||||| |||| ||||||||||  | ||||||||||||||||| ||||||| ||||| || ||||||||||||||| |    
T  4944538 cattccattgtttggatattatacgacgaaatggaactaatttcatactccattgtttggaaagtggacggaatggaattagatataacttttttattcc 4944439  T
Q  530 aattttacccttt 542  Q
    | |||||||||||    
T  4944438 atttttacccttt 4944426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 430 - 552
Target Start/End: Complemental strand, 11617939 - 11617818
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| |||||||| |||||| | |||||||||||||||||||| || |||||||||||||||||  |||||||||||   ||||||||| ||||||| |    
T  11617939 cattccattgtttgaatatttcaagacggaatgaaactaatttcccactccattgtttggaaagtgaacggaacggaacatgttataact-ttttattcc 11617841  T
Q  530 aattttaccctttatcttaaaaa 552  Q
    ||||||||||||||  |||||||    
T  11617840 aattttaccctttagtttaaaaa 11617818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 431 - 544
Target Start/End: Original strand, 7505321 - 7505434
Alignment:
Q  431 attctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttca 530  Q
    |||| ||| ||| |||| |||| || |||||| | |||||||  |||||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||    
T  7505321 attccattatttagatactttatgatggaatggagctaattttccattccattgtttgaaaagttgacggaacggaatgagttatatcttttttattcca 7505420  T
Q  531 attttaccctttat 544  Q
    |||||||| |||||    
T  7505421 attttaccttttat 7505434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 469 - 541
Target Start/End: Original strand, 16596790 - 16596862
Alignment:
Q  469 atttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    |||||||||||||||||||| ||| | || | || |||||||||||||||||||||||| |||||||||||||    
T  16596790 atttctcattccattgtttgaaaaattgatgtaatggaatgagttataacttttttattccaattttaccctt 16596862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 429 - 520
Target Start/End: Complemental strand, 21521545 - 21521454
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataactt 520  Q
    |||||| |||||||||||||| ||||| |||||| ||| |||| || ||||||||||||| |||||  |||||| ||||||| |||||||||    
T  21521545 tcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacggaatggaatgaattataactt 21521454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 429 - 520
Target Start/End: Complemental strand, 21532111 - 21532020
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataactt 520  Q
    |||||| |||||||||||||| ||||| |||||| ||| |||| || ||||||||||||| |||||  |||||| ||||||| |||||||||    
T  21532111 tcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacggaatggaatgaattataactt 21532020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 436 - 527
Target Start/End: Complemental strand, 41484347 - 41484256
Alignment:
Q  436 attgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatt 527  Q
    |||||||||||||||||||| |||| | ||| ||||  |||||||||||||| ||||||  |||||||||||||| |||||| || ||||||    
T  41484347 attgtttggatattttacgatggaacggaacaaattattcattccattgtttagaaagtgaacggaacggaatgaattataagttatttatt 41484256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 9161775 - 9161705
Alignment:
Q  467 taatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttac 537  Q
    |||||||||||||||||||||||||| |  ||||||| | ||||||||| | ||||||||| |||||||||    
T  9161775 taatttctcattccattgtttggaaaatcaacggaacaggatgagttatgaattttttattccaattttac 9161705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 15024089 - 15024025
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagt 494  Q
    ||||||||||||| | |||| |||||||||||| ||| || || |||||||||||||| ||||||    
T  15024089 cattctattgtttaggtattgtacgacggaatggaacaaacttttcattccattgtttagaaagt 15024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 517
Target Start/End: Complemental strand, 16921492 - 16921444
Alignment:
Q  469 atttctcattccattgtttggaaagtagacggaacggaatgagttataa 517  Q
    |||||||||||||||||||||||| | |||||||  |||||||||||||    
T  16921492 atttctcattccattgtttggaaaattgacggaatagaatgagttataa 16921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 552
Target Start/End: Complemental strand, 21018221 - 21018105
Alignment:
Q  436 attgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatttt 535  Q
    |||||||| |||||||| | | |||| ||||||||||||||  | |||||||| ||||| || ||||    ||| |||||||||||||||||||| |||     
T  21018221 attgtttgaatattttatggcagaataaaactaatttctcaccctattgtttgaaaagtggatggaataagatgtgttataacttttttatttcattttc 21018122  T
Q  536 accctttatcttaaaaa 552  Q
    ||| ||||  |||||||    
T  21018121 accttttagtttaaaaa 21018105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 541
Target Start/End: Original strand, 7506283 - 7506347
Alignment:
Q  477 ttccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    |||||||||||||||||| ||||||| ||||  |||||||| || || ||| || ||||||||||    
T  7506283 ttccattgtttggaaagtggacggaatggaacaagttataatttcttaattccatttttaccctt 7506347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 135; Significance: 4e-70; HSPs: 4)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 421 - 575
Target Start/End: Original strand, 77208 - 77361
Alignment:
Q  421 gaatgttctcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataactt 520  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  77208 gaatgttc-cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataactt 77306  T
Q  521 ttttatttcaattttaccctttatcttaaaaaattaacaataaagcatcaatatt 575  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  77307 ttttatttcaattttaccctttattttaaaaaattaacaataaagcatcaatatt 77361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 421 - 575
Target Start/End: Original strand, 43488 - 43640
Alignment:
Q  421 gaatgttctcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataactt 520  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43488 gaatgttc-cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataactt 43586  T
Q  521 ttttatttcaattttaccctttatcttaaaaaattaacaataaagcatcaatatt 575  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  43587 ttttatttcaattttaccctttat-tttaaaaattaacaataaagcatcaatatt 43640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 43385 - 43445
Alignment:
Q  358 cttaaggttttgtttggatatcttaaaattaacggaacggagtggtgcggaacagaatgga 418  Q
    ||||||| |||||||||||||||||||| ||||| ||||||| || ||||||  |||||||    
T  43385 cttaaggctttgtttggatatcttaaaactaacgaaacggagcggagcggaatggaatgga 43445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 77105 - 77165
Alignment:
Q  358 cttaaggttttgtttggatatcttaaaattaacggaacggagtggtgcggaacagaatgga 418  Q
    ||||||| |||||||||||||||||||| ||||| ||||||| || ||||||  |||||||    
T  77105 cttaaggctttgtttggatatcttaaaactaacgaaacggagcggagcggaatggaatgga 77165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 430 - 543
Target Start/End: Original strand, 17999006 - 17999119
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||| |||||||||| | | || ||||||||||||||||    
T  17999006 cattctattgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagtggacggaacgggaagtgtcataacttttttatttc 17999105  T
Q  530 aattttacccttta 543  Q
    | ||||||||||||    
T  17999106 atttttacccttta 17999119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 542
Target Start/End: Complemental strand, 28219793 - 28219680
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| |||||||||||||| |||| ||||||| |||||||||| || ||||||||||||||||| ||||||| | ||| |||||||||||||||||||    
T  28219793 tcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataacttttttattt 28219694  T
Q  529 caattttacccttt 542  Q
    || |||||||||||    
T  28219693 catttttacccttt 28219680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 552
Target Start/End: Complemental strand, 10354956 - 10354833
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| ||||||||||||||| | ||||||||| |||||||||| || |||||||||||||| ||  |||||||||||   |||||||||||||||||     
T  10354956 tcattccattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaggtgaacggaacggaacatgttataacttttttattc 10354857  T
Q  529 caattttaccctttatcttaaaaa 552  Q
    |||||||||||||||  |||||||    
T  10354856 caattttaccctttagtttaaaaa 10354833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 434 - 552
Target Start/End: Original strand, 28198551 - 28198668
Alignment:
Q  434 ctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatt 533  Q
    |||||||||||||||||||| |||||||| |||||||||  || | |||||||||||||||  | |||||||||||| |||||||||||||||| || ||    
T  28198551 ctattgtttggatattttactacggaatggaactaattttccacttcattgtttggaaagtgaatggaacggaatgatttataacttttttattccattt 28198650  T
Q  534 ttaccctttatcttaaaaa 552  Q
    |||||||||| ||||||||    
T  28198651 ttacccttta-cttaaaaa 28198668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 430 - 544
Target Start/End: Original strand, 22017713 - 22017827
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| |||||| ||||| ||||| | |||||| ||||||||| ||||||||||||| ||||| | ||||||||||||||| |||||| |||||||||      
T  22017713 cattccattgttcggatactttacaatggaatgcaactaatttttcattccattgttaggaaaattgacggaacggaatgaattataatttttttattca 22017812  T
Q  530 aattttaccctttat 544  Q
     ||||||||||||||    
T  22017813 tattttaccctttat 22017827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 553
Target Start/End: Complemental strand, 23701745 - 23701623
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| |||| || ||||||||| ||| |||| | ||||||||  |||||||||||||||||||| || | || |||||||||||||||| |||||||     
T  23701745 tcattccattgcttagatattttatgacagaataagactaattttccattccattgtttggaaagttgatgaaatggaatgagttataact-ttttattc 23701647  T
Q  529 caattttaccctttatcttaaaaaa 553  Q
    |||||||  ||||||| ||||||||    
T  23701646 caattttgacctttat-ttaaaaaa 23701623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 541
Target Start/End: Complemental strand, 8856152 - 8856016
Alignment:
Q  405 cggaacagaatggaaggaatgttctcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtaga-cggaac 503  Q
    |||||| ||||||||  ||| |||| |||||||||||||| |||| || ||||||  | ||| |||| ||  ||||||||||||||||   || |||||     
T  8856152 cggaacggaatggaataaatattct-attctattgtttgggtattatatgacggagcggaacaaattacttgttccattgtttggaaaaatgaacggaat 8856054  T
Q  504 ggaatgagttataacttttttatttcaattttaccctt 541  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  8856053 ggaatgtgttataacttttttatttcatttttaccctt 8856016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 429 - 541
Target Start/End: Original strand, 7444439 - 7444549
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    ||||| ||||||||||||| |||| || |||| | |||| |||| | |||| |||||||||||| | |||| ||||||| ||||||||| |||||||||     
T  7444439 tcattatattgtttggatactttatgatggaacggaacttattttttattc-attgtttggaaatt-gacgaaacggaacgagttataaattttttattc 7444536  T
Q  529 caattttaccctt 541  Q
    |||||||||||||    
T  7444537 caattttaccctt 7444549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 553
Target Start/End: Complemental strand, 44247129 - 44247008
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| || |||||||||||| |||| |||| |||||||| ||  || |||||||||||| |||| ||| ||| ||||||  |||||| ||||||||| |    
T  44247129 cattccatcgtttggatatttcacgatggaacgaaactaactttccactccattgtttgggaagttgacagaatggaatgtattataa-ttttttattcc 44247031  T
Q  530 aattttaccctttatcttaaaaaa 553  Q
    ||||||| ||||||| ||||||||    
T  44247030 aattttaacctttat-ttaaaaaa 44247008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 541
Target Start/End: Original strand, 12432863 - 12432928
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||| |||||||| || ||||||||||    
T  12432863 cattccattgtttggaaagttgacggaatggaataaattataac-tttttattccatttttaccctt 12432928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 536
Target Start/End: Original strand, 822502 - 822567
Alignment:
Q  471 ttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatttta 536  Q
    ||||||||||||| ||||||||| |||| ||| | ||||||||||||  |||||||| || |||||    
T  822502 ttctcattccattatttggaaagcagacagaatgtaatgagttataatatttttattccattttta 822567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 544
Target Start/End: Original strand, 14323012 - 14323111
Alignment:
Q  444 gatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttacccttta 543  Q
    |||| |||| || ||||||  |||||||| |||||| |||||||||||| | |||  || | ||| |||||||| |||||||||  ||||||||||||||    
T  14323012 gatactttatgatggaatggtactaatttttcattctattgtttggaaatttgacaaaatgaaataagttataa-ttttttattctaattttacccttta 14323110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 541
Target Start/End: Complemental strand, 50859509 - 50859398
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| || |||||| |||||||||| ||||||| |||||||||||||||||||||||| |    
T  50859509 cattccattgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtggacggaatggaatgagttataacttttttattcc 50859410  T
Q  530 aattttaccctt 541  Q
    | ||||||||||    
T  50859409 atttttaccctt 50859398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 429 - 544
Target Start/End: Complemental strand, 31229109 - 31228994
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| | ||||||||||||||| ||  ||||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||     
T  31229109 tcattccactgtttggatattttatgagagaatgaaacaaatttcacaatccattgtttggaaagttgacggaacggaatgagttataacatttttattc 31229010  T
Q  529 caattttaccctttat 544  Q
    |||||||||| |||||    
T  31229009 caattttaccttttat 31228994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 368 - 541
Target Start/End: Original strand, 41222915 - 41223087
Alignment:
Q  368 tgtttggatatcttaaaattaacggaacggagtggtgcggaacagaatggaaggaatgttctcattctattgtttggatattttacgacggaatgaaact 467  Q
    ||||||||||  | ||||| ||||||||||| |||  |||||| ||||||||  ||  ||| ||||| |||||||||||| |||| || |||| | ||||    
T  41222915 tgtttggataagtgaaaatcaacggaacggaatggaacggaacggaatggaataaagattc-cattccattgtttggatactttatgatggaacggaact 41223013  T
Q  468 aatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    | |||  ||||||||||||||||||||  ||||||||||| ||||||||||||||||||| |||||||||||||    
T  41223014 agttttccattccattgtttggaaagttaacggaacggaacgagttataacttttttattccaattttaccctt 41223087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 436 - 552
Target Start/End: Complemental strand, 35292743 - 35292627
Alignment:
Q  436 attgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatttt 535  Q
    ||||||||||||||| | ||||||||| |||||||||| || |||||||||||||||||  || ||||||||   ||||||||||||||||| |||||||    
T  35292743 attgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaagtgaacagaacggaacatgttataacttttttattccaatttt 35292644  T
Q  536 accctttatcttaaaaa 552  Q
    ||||||||  |||||||    
T  35292643 accctttagtttaaaaa 35292627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 430 - 553
Target Start/End: Complemental strand, 48085317 - 48085196
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| ||||||||||||||| |||| |||||||| |||||||  |||||| ||||||| ||| | ||||||||||||| | |||||||||||||||| |    
T  48085317 cattccattgtttggatattt-acgatggaatgaagctaattttccattcctttgtttgaaaaatcgacggaacggaattaattataacttttttattcc 48085219  T
Q  530 aattttaccctttatcttaaaaaa 553  Q
    ||||||||||||||| ||||||||    
T  48085218 aattttaccctttat-ttaaaaaa 48085196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 434 - 552
Target Start/End: Complemental strand, 13780036 - 13779919
Alignment:
Q  434 ctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatt 533  Q
    |||||||||||||||||||| |||||||| |||||||||  || |||||||||||||||||  | |||||||||||| |||||| ||||||||| || ||    
T  13780036 ctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataatttttttattccattt 13779937  T
Q  534 ttaccctttatcttaaaaa 552  Q
    ||||| |||| ||||||||    
T  13779936 ttaccattta-cttaaaaa 13779919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 434 - 552
Target Start/End: Original strand, 35033210 - 35033327
Alignment:
Q  434 ctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatt 533  Q
    |||||||||||||||||||| |||||||| |||||||||  || |||||||||||||||||  | |||||||||||| |||||| ||||||||| || ||    
T  35033210 ctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataatttttttattccattt 35033309  T
Q  534 ttaccctttatcttaaaaa 552  Q
    ||||| |||| ||||||||    
T  35033310 ttaccattta-cttaaaaa 35033327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 431 - 542
Target Start/End: Original strand, 4292009 - 4292119
Alignment:
Q  431 attctattgtttggatattttacgacggaatgaaacta-atttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    |||| ||||||||||||||||| |||||||||||  || |||||| ||||||||||||||||||| |||||||| |||||||||||| |  ||| ||| |    
T  4292009 attccattgtttggatattttatgacggaatgaatttagatttct-attccattgtttggaaagtggacggaacagaatgagttatagc-ctttaattcc 4292106  T
Q  530 aattttacccttt 542  Q
    |||||||||||||    
T  4292107 aattttacccttt 4292119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 430 - 543
Target Start/End: Original strand, 21261095 - 21261208
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| ||||||| |||||| || |||||||||| ||||||||   | |||||||||||||||||  |||||| ||||| |||||||||||||||||| |    
T  21261095 cattccattgttttgatattatatgacggaatgagactaattttctactccattgtttggaaagtgaacggaatggaattagttataacttttttattcc 21261194  T
Q  530 aattttacccttta 543  Q
       |||||||||||    
T  21261195 ttatttacccttta 21261208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 538
Target Start/End: Complemental strand, 25054866 - 25054764
Alignment:
Q  436 attgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatttt 535  Q
    ||||||||| |||||||||| |||||| ||| |||||  || |||||| |||| ||||| |||||||  |||| | |||||||||||||||| |||||||    
T  25054866 attgtttgggtattttacgatggaatggaacaaatttaccactccattttttgaaaagttgacggaatagaataaattataacttttttattccaatttt 25054767  T
Q  536 acc 538  Q
    |||    
T  25054766 acc 25054764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 539
Target Start/End: Complemental strand, 46142713 - 46142604
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| ||||||||||||||| ||||||||  | ||  || || ||||||||||||||||||||   ||| || ||||||| |||||||||||||||| |    
T  46142713 cattccattgtttggatatttcacgacggagcggaataaaattttcattccattgtttggaaagagaacgaaatggaatgaattataacttttttattcc 46142614  T
Q  530 aattttaccc 539  Q
    | ||||||||    
T  46142613 atttttaccc 46142604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 42245420 - 42245482
Alignment:
Q  506 aatgagttataacttttttatttcaattttaccctttatcttaaaaaattaacaataaagcatc 569  Q
    ||||||||||||||||||||||| ||||||||| ||||| || |||||  ||||||||||||||    
T  42245420 aatgagttataacttttttattttaattttaccttttat-ttgaaaaagcaacaataaagcatc 42245482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 535
Target Start/End: Complemental strand, 30670697 - 30670599
Alignment:
Q  437 ttgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatttt 535  Q
    ||||||||||||||||||| |||||  ||||| ||||  || ||||| ||| |||| | ||| ||||  |||||| ||||||||||||||| |||||||    
T  30670697 ttgtttggatattttacgatggaatataactagtttcatatcccattttttagaaaattgacagaacaaaatgagctataacttttttattccaatttt 30670599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 553
Target Start/End: Original strand, 41809231 - 41809278
Alignment:
Q  505 gaatgagttataacttttttatttcaattttaccctttatcttaaaaaa 553  Q
    ||||||||||||| | ||||||| |||||||||||||||| ||||||||    
T  41809231 gaatgagttataaatattttattccaattttaccctttat-ttaaaaaa 41809278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 446 - 544
Target Start/End: Original strand, 24373430 - 24373528
Alignment:
Q  446 tattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctttat 544  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||  | |||||||||||||||||||||||||||||||||    
T  24373430 tattttacgacggaatgaaactaatttcccattccattgtttggaaagtggatggaacagaacaaattataacttttttatttcaattttaccctttat 24373528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 429 - 552
Target Start/End: Original strand, 39439291 - 39439414
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| ||||||||||||||| | |||||||||||||||||||| || ||||||||||| |||||  |||||||||||   |||||||||||||||||     
T  39439291 tcattccattgtttggatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaacggaacatgttataacttttttattc 39439390  T
Q  529 caattttaccctttatcttaaaaa 552  Q
    |||||||||||||||  |||||||    
T  39439391 caattttaccctttagtttaaaaa 39439414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 429 - 555
Target Start/End: Original strand, 42028645 - 42028770
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| |||||||||||||| |||| ||||||| |||||||||| || ||||||||||||||||| ||||||| | ||| ||||||||||||||||||     
T  42028645 tcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataacttttttattc 42028744  T
Q  529 caattttaccctttatcttaaaaaatt 555  Q
    || ||||||||||| ||||| ||||||    
T  42028745 catttttacccttt-tcttagaaaatt 42028770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 429 - 543
Target Start/End: Complemental strand, 44714119 - 44714005
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| |||||||||||||||||||| |||||| ||||||||| |||||| ||||||||| || |  |||||||||||||| |||||| |||||||||     
T  44714119 tcattcaattgtttggatattttacgatggaatggaactaatttttcattctattgtttggcaaatgaacggaacggaatgaattataatttttttattc 44714020  T
Q  529 caattttacccttta 543  Q
    |||||||||||||||    
T  44714019 caattttacccttta 44714005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 434 - 552
Target Start/End: Complemental strand, 25046164 - 25046047
Alignment:
Q  434 ctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatt 533  Q
    |||||||||||||||||||| |||||||  |||||||||  || |||||||||| ||||||  | |||||||||||| |||||||||||||||| || ||    
T  25046164 ctattgtttggatattttactacggaattgaactaattttccactccattgtttagaaagtgaatggaacggaatgatttataacttttttattccattt 25046065  T
Q  534 ttaccctttatcttaaaaa 552  Q
    |||||||||| ||||||||    
T  25046064 ttacccttta-cttaaaaa 25046047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 434 - 552
Target Start/End: Complemental strand, 32279150 - 32279033
Alignment:
Q  434 ctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatt 533  Q
    |||||||||||||||||||| |||||||  |||||||||  || |||||||||||||||||  | |||||||||||| |||||||||||| ||| || ||    
T  32279150 ctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataactttttcattccattt 32279051  T
Q  534 ttaccctttatcttaaaaa 552  Q
    |||||||||| ||||||||    
T  32279050 ttacccttta-cttaaaaa 32279033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 541
Target Start/End: Original strand, 35231281 - 35231351
Alignment:
Q  471 ttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    |||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||| |||||||||||||    
T  35231281 ttctcattccattgtttggaaaattgacggaatggaatgagttataatttttttattccaattttaccctt 35231351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 542
Target Start/End: Original strand, 40022935 - 40023036
Alignment:
Q  441 ttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccct 540  Q
    |||||||||||||||  ||| | ||||||||| |||||||| | |||  ||||| ||||||||  |||||||||||| |||||||||  |||||||||||    
T  40022935 ttggatattttacgatagaacggaactaatttttcattccactatttaaaaagtggacggaacataatgagttataatttttttattctaattttaccct 40023034  T
Q  541 tt 542  Q
    ||    
T  40023035 tt 40023036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 557
Target Start/End: Complemental strand, 27011934 - 27011857
Alignment:
Q  478 tccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctttatcttaaaaaattaa 557  Q
    ||||||||||||||||| |||| || ||||||  |||||| ||||||||| |||||||| ||||||| ||||||||||||    
T  27011934 tccattgtttggaaagttgacgaaatggaatgtattataa-ttttttattccaattttaacctttat-ttaaaaaattaa 27011857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 541
Target Start/End: Original strand, 2144599 - 2144664
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||| |||||||| || ||||||||||    
T  2144599 cattccattgtttggaaagttgacggaatggaataaattataac-tttttattccatttttaccctt 2144664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 42958312 - 42958275
Alignment:
Q  435 tattgtttggatattttacgacggaatgaaactaattt 472  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42958312 tattgtttggatattttacgacggaaggaaactaattt 42958275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 23420552 - 23420500
Alignment:
Q  431 attctattgtttggatattttacgacggaatgaaactaatttctcattccatt 483  Q
    |||| ||||||||||||||||| || ||||||||||||||||  |||||||||    
T  23420552 attccattgtttggatattttatgatggaatgaaactaattttccattccatt 23420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 429 - 541
Target Start/End: Complemental strand, 57734 - 57622
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| |||||||||||| |||| || |||| | ||||| |||  ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  57734 tcattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaacggaacgagttataacttttttattt 57635  T
Q  529 caattttaccctt 541  Q
    |||||||||||||    
T  57634 caattttaccctt 57622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 429 - 541
Target Start/End: Original strand, 34924052 - 34924164
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| |||||||||||| |||| || |||| ||||||| |||  ||||||||||||||||||||  ||||||||||| |||||||||||||||||||     
T  34924052 tcattccattgtttggatactttatgatggaacgaaactagttttccattccattgtttggaaagttaacggaacggaacgagttataacttttttattc 34924151  T
Q  529 caattttaccctt 541  Q
    |||||||||||||    
T  34924152 caattttaccctt 34924164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 436 - 554
Target Start/End: Complemental strand, 38680575 - 38680456
Alignment:
Q  436 attgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataactt-ttttatttcaattt 534  Q
    |||||||||||||||||||| |||||  |||||||||| || ||||||| ||||||||| ||||||||| || | |||||||||| ||||||| |  |||    
T  38680575 attgtttggatattttacgatggaattgaactaatttcccactccattgcttggaaagtggacggaacgaaaagtgttataactttttttattccttttt 38680476  T
Q  535 taccctttatcttaaaaaat 554  Q
    |||||||||  |||||||||    
T  38680475 taccctttagtttaaaaaat 38680456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 542
Target Start/End: Complemental strand, 29845036 - 29844924
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| | ||||||||||||| | ||||||||| |||||||||| ||||||||||||||  |||| || |||||  ||||  |||||||| ||||||||    
T  29845036 tcattccactgtttggatatttaatgacggaatggaactaatttcccattccattgtttgagaagtcgatggaacataatggattataact-ttttattt 29844938  T
Q  529 caattttacccttt 542  Q
    ||||||||||||||    
T  29844937 caattttacccttt 29844924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 475 - 541
Target Start/End: Original strand, 14111691 - 14111757
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||||||||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||||    
T  14111691 cattccattgtttggaaagttagcggaacggaacgagttataacttttttattccaattttaccctt 14111757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 541
Target Start/End: Complemental strand, 20307787 - 20307721
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||||| |||||||||||| ||||||| ||||| | ||||||| |||||||| || ||||||||||    
T  20307787 cattccaatgtttggaaagttgacggaatggaataaattataacatttttattccatttttaccctt 20307721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 541
Target Start/End: Complemental strand, 21094420 - 21094354
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||||| |||||||||||| ||||||| ||||| | ||||||| |||||||| || ||||||||||    
T  21094420 cattccaatgtttggaaagttgacggaatggaataaattataacatttttattccatttttaccctt 21094354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 30801011 - 30800940
Alignment:
Q  506 aatgagttataacttttt---tatttcaattttaccctttatcttaaaaaattaacaataaagcatcaatatt 575  Q
    ||||||||||||||||||   ||||||||||||||||||||| || |||||  ||||||||| ||||||||||    
T  30801011 aatgagttataactttttatttatttcaattttaccctttat-tttaaaaagcaacaataaaacatcaatatt 30800940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 541
Target Start/End: Complemental strand, 44605957 - 44605891
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||||| |||||||||||| ||||||| ||||| | ||||||| |||||||| || ||||||||||    
T  44605957 cattccaatgtttggaaagttgacggaatggaataaattataacatttttattccatttttaccctt 44605891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 541
Target Start/End: Original strand, 42024777 - 42024854
Alignment:
Q  462 gaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||||||||| | |||| |||||||||||| | |||| |||||||  |||||||| ||||||||| |||||||||||||    
T  42024777 gaaactaattttttattc-attgtttggaaatt-gacgaaacggaacaagttataaattttttattccaattttaccctt 42024854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 438 - 553
Target Start/End: Complemental strand, 12634159 - 12634045
Alignment:
Q  438 tgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttac 537  Q
    ||||||||||||||| |||| |||| ||  |||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||| |||    
T  12634159 tgtttggatattttatgacgaaatggaataaatttcacattccattgtttggaaagtcgacggaacggaatgaattataacatttttattccaattatac 12634060  T
Q  538 cctttatcttaaaaaa 553  Q
    ||||||| ||||||||    
T  12634059 cctttat-ttaaaaaa 12634045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 434 - 552
Target Start/End: Complemental strand, 19626207 - 19626090
Alignment:
Q  434 ctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatt 533  Q
    |||||||||||||||||||| |||||||| |||||||||  || || ||||||||||||||  | |||||||||||| |||||| ||||||||| || ||    
T  19626207 ctattgtttggatattttactacggaatggaactaattttccactcaattgtttggaaagtgaatggaacggaatgatttataatttttttattccattt 19626108  T
Q  534 ttaccctttatcttaaaaa 552  Q
    |||||||||| ||||||||    
T  19626107 ttacccttta-cttaaaaa 19626090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 469 - 541
Target Start/End: Complemental strand, 5350414 - 5350342
Alignment:
Q  469 atttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||||||||| |||||||||||||| |||| || ||||| |||||||||||||| |||||||||||||||||    
T  5350414 atttctcattctattgtttggaaagttgacgaaatggaataagttataactttttaatttcaattttaccctt 5350342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 430 - 541
Target Start/End: Complemental strand, 19848532 - 19848426
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| |||||||||||| |||| || |||| | ||||| |||  ||||||||||||||||||||      ||||||| |||||||||||||||||||||    
T  19848532 cattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagt-----taacggaacgagttataacttttttatttc 19848438  T
Q  530 aattttaccctt 541  Q
    ||||||||||||    
T  19848437 aattttaccctt 19848426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 430 - 543
Target Start/End: Original strand, 36656832 - 36656945
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| |||| |||||||||||| ||||||||| |||||| ||  |  |||||||||||||  ||  ||||||||||| | |||||||||||||||||||    
T  36656832 cattccattgcttggatattttatgacggaatggaactaactttccgctccattgtttggatcgtgaacggaacggaacgtgttataacttttttatttc 36656931  T
Q  530 aattttacccttta 543  Q
    | |||| |||||||    
T  36656932 atttttgcccttta 36656945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 527
Target Start/End: Original strand, 3215211 - 3215309
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatt 527  Q
    |||||| ||||| ||||||||||  ||||||||| |||||| |||||| |||||| ||| |||| | |||||||| |||    ||||||||||||||||    
T  3215211 tcattccattgtgtggatattttctgacggaatggaactaacttctcactccattatttagaaaatggacggaacagaaaatattataacttttttatt 3215309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 541
Target Start/End: Original strand, 28300778 - 28300843
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||| |||||||| || ||||||||||    
T  28300778 cattccattgtttggaaagttgacggaatggaataaattataac-tttttattccatttttaccctt 28300843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 505 - 542
Target Start/End: Original strand, 260960 - 260997
Alignment:
Q  505 gaatgagttataacttttttatttcaattttacccttt 542  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  260960 gaatgagttataacttttttaattcaattttacccttt 260997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 539
Target Start/End: Original strand, 23416339 - 23416447
Alignment:
Q  431 attctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttca 530  Q
    |||| ||||||||| |||| ||| | |||  | ||| |||| || ||||||||||||||||| |  |||||| |||||| ||||||| ||||||||| ||    
T  23416339 attccattgtttgggtattatacaatggagcggaacaaattacttattccattgtttggaaaatgaacggaatggaatgtgttataaattttttattcca 23416438  T
Q  531 attttaccc 539  Q
     ||||||||    
T  23416439 tttttaccc 23416447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 553
Target Start/End: Original strand, 23416580 - 23416653
Alignment:
Q  478 tccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctttatcttaaaaaa 553  Q
    |||||||||||| |||| ||||||| ||||||  |||||| ||||||||| |||||||| ||||||| ||||||||    
T  23416580 tccattgtttgggaagttgacggaatggaatgtattataa-ttttttattccaattttaacctttat-ttaaaaaa 23416653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 541
Target Start/End: Original strand, 45843753 - 45843818
Alignment:
Q  476 attccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||| |||||||||||||  ||||||  |||||||||||||| |||||||| || ||| ||||||    
T  45843753 attccgttgtttggaaagtgaacggaatagaatgagttataacgtttttattccattttcaccctt 45843818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 429 - 543
Target Start/End: Complemental strand, 34970911 - 34970797
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| |||||||||| | | |||||| | ||||||||     
T  34970911 tcattccattgtttggatattttatgacggaatggaactaatttcccactccattgtttggaaagtggacggaacgggaagtgttataccctttttattc 34970812  T
Q  529 caattttacccttta 543  Q
    || ||||||||||||    
T  34970811 catttttacccttta 34970797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 438 - 554
Target Start/End: Complemental strand, 41404922 - 41404807
Alignment:
Q  438 tgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttac 537  Q
    |||||||||| |||||||||||||  |  ||||||| |||||||||||||||||| |  ||||||||||||||||||||| | ||||||| |||||||||    
T  41404922 tgtttggatactttacgacggaatctagttaatttcccattccattgtttggaaaatcaacggaacggaatgagttataaatattttattccaattttac 41404823  T
Q  538 cctttatcttaaaaaat 554  Q
    ||||||| |||||||||    
T  41404822 cctttat-ttaaaaaat 41404807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 429 - 552
Target Start/End: Complemental strand, 48047097 - 48046974
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| |||||||||| |||||| ||| ||||| |||||||||| || |||||||||||||||||  | |||||||||   |||||||||||||||||     
T  48047097 tcattccattgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagtgaatggaacggaacatgttataacttttttattc 48046998  T
Q  529 caattttaccctttatcttaaaaa 552  Q
    |||||||||||||||  |||||||    
T  48046997 caattttaccctttagtttaaaaa 48046974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 429 - 524
Target Start/End: Complemental strand, 49765661 - 49765566
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataactttttt 524  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||| || ||||||||||| ||||| |||||||||||| | ||||||||||||||    
T  49765661 tcattccattgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagtggacggaacggaaagtgttataactttttt 49765566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 430 - 542
Target Start/End: Complemental strand, 15582361 - 15582249
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| |||||||||||| |||| || |||||| |||||||||  |||||||||||||||||||| |||||||| ||| |||||||||   ||||||| |    
T  15582361 cattccattgtttggatactttatgatggaatggaactaattttccattccattgtttggaaagttgacggaacagaaagagttataaaaattttattcc 15582262  T
Q  530 aattttacccttt 542  Q
    |||||||||||||    
T  15582261 aattttacccttt 15582249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 429 - 543
Target Start/End: Complemental strand, 8099784 - 8099671
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||| ||||||||||||||  || ||||||||||||||||||| || |||||||||| |||| ||||||||||  |||||||||||| || ||| |||    
T  8099784 tcattccattgtttggatattaaacaacggaatgaaactaatttcccactccattgtttagaaaatagacggaacaaaatgagttataa-ttgttttttt 8099686  T
Q  529 caattttacccttta 543  Q
    || ||||||||||||    
T  8099685 catttttacccttta 8099671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 544
Target Start/End: Complemental strand, 41419183 - 41419074
Alignment:
Q  436 attgtttggatattttacgacggaatgaaactaatttctcattccattgtttgg-aaagtagacggaacggaatgagttataacttttttatttcaattt 534  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||| | || |||||  ||| ||||||| |||||||||||||| ||    
T  41419183 attgttttgatattttacgacagaatgaaactaatttctcattacattctttggaaaaatggatggaacaaaataagttatatcttttttatttcaaatt 41419084  T
Q  535 taccctttat 544  Q
    ||||||||||    
T  41419083 taccctttat 41419074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 541
Target Start/End: Original strand, 35306265 - 35306335
Alignment:
Q  471 ttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    |||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||| |||||||||||||    
T  35306265 ttctcattccattgtttggaaaattgacggaatggaatgagttataatttttttattccaattttaccctt 35306335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 430 - 542
Target Start/End: Complemental strand, 7521819 - 7521707
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| |||||||| |||||||| || |||||| | |||||||  ||||| |||||||| ||||| ||  |||  |||||||||||||||| ||||||||    
T  7521819 cattccattgtttgaatattttatgatggaatggagctaattttccattctattgtttgaaaagtcgagagaattgaatgagttataacttatttatttc 7521720  T
Q  530 aattttacccttt 542  Q
    |||||||||||||    
T  7521719 aattttacccttt 7521707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 430 - 541
Target Start/End: Complemental strand, 32573802 - 32573691
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| |||||||||||| |||| || ||||   ||||| |||  |||||||||||||| |||||  || |||||||| ||||||||||||||||||| |    
T  32573802 cattccattgtttggatactttatgatggaacagaactagttttccattccattgtttgaaaagttaacagaacggaacgagttataacttttttattcc 32573703  T
Q  530 aattttaccctt 541  Q
    ||||||||||||    
T  32573702 aattttaccctt 32573691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 464 - 542
Target Start/End: Original strand, 50138929 - 50139006
Alignment:
Q  464 aactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttacccttt 542  Q
    |||||||||||||||||||||||||  |||| || |||| |||||| |||||||| ||||||||||||| |||||||||    
T  50138929 aactaatttctcattccattgtttgagaagtcgatggaagggaatgtgttataac-tttttatttcaatcttacccttt 50139006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 541
Target Start/End: Original strand, 2664249 - 2664359
Alignment:
Q  430 cattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttc 529  Q
    ||||| |||||||||||  |||| || |||||  ||| |||||||||  ||||| |||||||||||||||||| | |||||||||||| | ||||||| |    
T  2664249 cattccattgtttggatgctttatgatggaattgaacaaatttctcaaaccattatttggaaagtagacggaatgaaatgagttataa-tcttttattcc 2664347  T
Q  530 aattttaccctt 541  Q
    | ||||||||||    
T  2664348 atttttaccctt 2664359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 552
Target Start/End: Complemental strand, 40641504 - 40641432
Alignment:
Q  480 cattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctttatcttaaaaa 552  Q
    ||||||||||||||| || ||| |||||  | |||||||||||||||| || |||||||||| || |||||||    
T  40641504 cattgtttggaaagtggatggagcggaacaaattataacttttttattccatttttacccttaattttaaaaa 40641432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 541
Target Start/End: Original strand, 29465520 - 29465585
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    |||||||||||||||||||| |||| || ||||| | ||||||| |||||||| || ||||||||||    
T  29465520 cattccattgtttggaaagttgacgaaatggaataaattataac-tttttattccatttttaccctt 29465585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 47980675 - 47980618
Alignment:
Q  477 ttccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatttt 535  Q
    |||||||||||||||||||||||||| ||||  |||||| ||||||||| ||| |||||    
T  47980675 ttccattgtttggaaagtagacggaatggaacaagttat-acttttttaattccatttt 47980618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 541
Target Start/End: Original strand, 50108489 - 50108526
Alignment:
Q  504 ggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  50108489 ggaataagttataacttttttattccaattttaccctt 50108526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 523
Target Start/End: Complemental strand, 23474509 - 23474462
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttt 523  Q
    |||| ||||||||||||||| ||||||||||||||| |||||| |||||    
T  23474509 catttcattgtttggaaagtggacggaacggaatga-ttataatttttt 23474462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 499
Target Start/End: Original strand, 45848597 - 45848665
Alignment:
Q  431 attctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacg 499  Q
    |||||||||||||||||||| | |||| |||||||||| ||| | |||| |||||| | ||||| ||||    
T  45848597 attctattgtttggatatttaatgacgaaatgaaactatttttttattctattgttggaaaagtggacg 45848665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 50138450 - 50138494
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttc 473  Q
    |||||| | ||||||||||||| ||||||||||| ||||||||||    
T  50138450 tcattccactgtttggatatttaacgacggaatggaactaatttc 50138494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 440 - 538
Target Start/End: Complemental strand, 29644716 - 29644618
Alignment:
Q  440 tttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttacc 538  Q
    ||||||||||||| ||  ||||||||||||||| |||||||||| |||| |||||||||||| | | ||||||||||||||||||||| ||||||||||    
T  29644716 tttggatattttatgagagaatgaaactaatttttcattccattatttgaaaagtagacggagcaggatgagttataacttttttattccaattttacc 29644618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 538
Target Start/End: Complemental strand, 7314345 - 7314234
Alignment:
Q  427 tctcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttat 526  Q
    |||||||||||| ||||||||||||| |  |||||| ||| || || |||||||||||||||  ||  ||||||||  |||||| |||||| ||||| ||    
T  7314345 tctcattctattatttggatattttatggtggaatggaacaaagttgtcattccattgtttgagaatgagacggaatagaatgacttataattttttcat 7314246  T
Q  527 ttcaattttacc 538  Q
    |  |||||||||    
T  7314245 tctaattttacc 7314234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 539
Target Start/End: Complemental strand, 13106622 - 13106518
Alignment:
Q  435 tattgtttggatattttacgacggaatgaaactaa-tttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaatt 533  Q
    |||||||||||||||| ||||||||  | ||  || ||||| ||||||||||||||||||   ||| ||  |||||| ||||||||||||||||||| ||    
T  13106622 tattgtttggatatttaacgacggagcggaataaaatttct-attccattgtttggaaagagaacgaaatagaatgaattataacttttttatttcattt 13106524  T
Q  534 ttaccc 539  Q
    ||||||    
T  13106523 ttaccc 13106518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 544
Target Start/End: Complemental strand, 6193149 - 6193088
Alignment:
Q  482 ttgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctttat 544  Q
    ||||||| | ||| ||||||||||||||| |||||  |||||||||||||||||| |||||||    
T  6193149 ttgtttgaatagtggacggaacggaatga-ttatatattttttatttcaattttaacctttat 6193088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 541
Target Start/End: Complemental strand, 10144825 - 10144760
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||||||| |||||||||| ||||||| ||||| | |||||||| ||||||| || ||||||||||    
T  10144825 cattccattatttggaaagttgacggaatggaataaattataact-ttttattccatttttaccctt 10144760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 542
Target Start/End: Original strand, 8574 - 8675
Alignment:
Q  440 tttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccc 539  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||||   |||| ||  |||| |||||||||||||| ||||||||||||||||||||    
T  8574 tttggatatttaatgacggaatggaactaatttctcattccattgtttaagaagttgatagaacagaatgagttataac-tttttatttcaattttaccc 8672  T
Q  540 ttt 542  Q
    |||    
T  8673 ttt 8675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 540
Target Start/End: Original strand, 11715 - 11826
Alignment:
Q  429 tcattctattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacggaacggaatgagttataacttttttattt 528  Q
    |||||||||||||||| ||||||||||||||  | ||  || || ||||| |||||||||||||||  ||||||| | || | ||||||| ||||||||     
T  11715 tcattctattgtttgggtattttacgacggagaggaataaaattatcatttcattgtttggaaagtgaacggaacagcataaattataacctttttattc 11814  T
Q  529 caattttaccct 540  Q
    || |||||||||    
T  11815 catttttaccct 11826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 553
Target Start/End: Original strand, 37940 - 38013
Alignment:
Q  478 tccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctttatcttaaaaaa 553  Q
    ||||||||||||||||  ||||||| ||||||  |||||| |||||||||||||||||| ||||||| ||||||||    
T  37940 tccattgtttggaaagatgacggaatggaatgtattataa-ttttttatttcaattttaacctttat-ttaaaaaa 38013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 541
Target Start/End: Original strand, 12156 - 12221
Alignment:
Q  475 cattccattgtttggaaagtagacggaacggaatgagttataacttttttatttcaattttaccctt 541  Q
    ||||||||| |||||||||| ||||||| ||||| | ||||||| |||||||| || ||||||||||    
T  12156 cattccattatttggaaagttgacggaatggaataaattataac-tttttattccatttttaccctt 12221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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