View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_19 (Length: 547)
Name: NF13040_low_19
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 16 - 530
Target Start/End: Complemental strand, 23697129 - 23696614
Alignment:
| Q |
16 |
agttccatggccattagatctttcctccctcgctcgccgtcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23697129 |
agttccatggccattagatctttcctccctcgctcgccatcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtg |
23697030 |
T |
|
| Q |
116 |
cacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtaaaa |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23697029 |
cacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtacaa |
23696930 |
T |
|
| Q |
216 |
tttttgtgaatctaacaccatattctcacaaagtgcctttccccatatctcaaacacatcctttggtataagggtgctacaattatgaggctccaatata |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23696929 |
tttttgtgaatctaacaccatattctcacaaagtgcctttccccatctctcaaacacatcctttggtataagggtgctacaattatgaggctccaatata |
23696830 |
T |
|
| Q |
316 |
ccattgcaatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacaatattcacagaaagagtgtgaac |
415 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23696829 |
ccattgcaatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacatccttcacagaaagagtgtgaac |
23696730 |
T |
|
| Q |
416 |
agttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggatt-ttttcaattgagaagaagattcaccttcaacaggtt |
514 |
Q |
| |
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|||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
23696729 |
agttttggttttcgaacatttctgcagcaggtttagcttccatgcagatagcacagtaggatttttttcaattgagaagaagattcacattcaacaggtt |
23696630 |
T |
|
| Q |
515 |
tgaggttagtttcagt |
530 |
Q |
| |
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|||||||||||||||| |
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| T |
23696629 |
tgaggttagtttcagt |
23696614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 16 - 497
Target Start/End: Original strand, 23700803 - 23701286
Alignment:
| Q |
16 |
agttccatggccattagatctttcctccctcgctcgccgtcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtg |
115 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| || ||||||||||||| | ||||||||||||||||||||||| |
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| T |
23700803 |
agttccatggccattagatcttccatccctcgctcgccgtctttcaagctttgaaacactttacaatcaacacctgtgtgccatgaaaccttacattgtg |
23700902 |
T |
|
| Q |
116 |
cacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtaaaa |
215 |
Q |
| |
|
|||| || ||||||| |||||| ||||| || ||| | || |||| | ||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
23700903 |
cacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaa |
23701002 |
T |
|
| Q |
216 |
tttttgtgaatctaacaccatattctcacaaagtgcctttccccatatctcaaacacatcctttggtataagggtgctacaattatgaggctccaatata |
315 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||| || | | ||||| |||||||||||| ||| |
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| T |
23701003 |
tttctgtgaacctaacaccatattctcacaaagtgaattttcccatctatcaaacacatcctttggtaaaattgaacaacaatcatgaggctccaaaata |
23701102 |
T |
|
| Q |
316 |
ccattgcaatttggataaggacattttaccattgctatattctct--tgaatttttgcagctagataacttccaacacaatattcacagaaagagtgtga |
413 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
23701103 |
tcattgcattttggatcaggacattttaccattgatatactctcttgtgaatttttgcagctagatatcttccaacacaatattcacagaaagagtgtga |
23701202 |
T |
|
| Q |
414 |
acagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttttcaattgagaagaaga |
497 |
Q |
| |
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||| ||| |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||| |||||| ||||||||||| |
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| T |
23701203 |
acattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaataggattgtttcaactgagaagaaga |
23701286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 497
Target Start/End: Complemental strand, 23694998 - 23694517
Alignment:
| Q |
16 |
agttccatggccattagatctttcctccctcgctcgccgtcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtg |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || |||| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
23694998 |
agttccatggccattagatcttccctccctcgctcaccatctttcaagcttagaaactctttacaatcaacacctatgtgccatgaaaccttacattgtg |
23694899 |
T |
|
| Q |
116 |
cacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtaaaa |
215 |
Q |
| |
|
|||| || ||||||| |||||| ||||| || ||| | || |||| | ||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
23694898 |
cacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaa |
23694799 |
T |
|
| Q |
216 |
tttttgtgaatctaacaccatattctcacaaagtgcctttccccatatctcaaacacatcctttggtataagggtgctacaattatgaggctccaatata |
315 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||| || | ||||||| |||||||||||| ||| |
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|
| T |
23694798 |
tttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttggtaaaattgaactacaatcatgaggctccaaaata |
23694699 |
T |
|
| Q |
316 |
ccattgcaatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacaatattcacagaaagagtgtgaac |
415 |
Q |
| |
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||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||| ||||||| |
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|
| T |
23694698 |
tcattgcattttggatcaggacattttaccattgatatactctcttgaatttttgcagctagatatcttccaagacaatcttcacagaaagaatgtgaac |
23694599 |
T |
|
| Q |
416 |
agttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttttcaattgagaagaaga |
497 |
Q |
| |
|
| |||||||| | ||||| |||||||| |||||||||||||| || |||||||||||||||| |||||| ||||||||||| |
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|
| T |
23694598 |
atttttggttctggaacatttcttcaacgggtttagcttccatacaaatagcacagtaggattgtttcaactgagaagaaga |
23694517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 65 - 420
Target Start/End: Original strand, 8148995 - 8149347
Alignment:
| Q |
65 |
tttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttc |
164 |
Q |
| |
|
||||||||||||||||||| || | | |||||||| ||| | ||||||||| || |||| ||||| |||||| ||||| || | || | |||||||| |
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|
| T |
8148995 |
tttgaaactctctacaatcgacttccgtgtgccatggaacttgacattgtgcgcagaatagtctatgacaatgtggacattccgtaattctcacaacttc |
8149094 |
T |
|
| Q |
165 |
ctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtaaaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatatc |
264 |
Q |
| |
|
| | |||||||||||||||||||||||||||| ||||||||||| |||| ||| | ||| | |||| | || || ||||| | ||||||| | |
|
|
| T |
8149095 |
atttccatcattcaccaacatagctgaacaatccttaaaaggacaataaattttctttgatccgaacatcgaat---caactagtgcatctccccatctt |
8149191 |
T |
|
| Q |
265 |
tcaaacacatcctttggtataagggtgctacaattatgaggctccaatataccattgcaatttggataaggacattttaccattgctatattctcttgaa |
364 |
Q |
| |
|
|| ||||||||||||||||||| | |||| | |||| || || ||| |||||||||||||| ||||||||||| ||||| | |||||||||| |
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|
| T |
8149192 |
tcgaacacatcctttggtataattgaaatacattgttgagtgtcaaaattactattgcaatttggatcaggacattttattgttgcttttttctcttgaa |
8149291 |
T |
|
| Q |
365 |
tttttgcagctagataacttccaacacaatattcacagaaagagtgtgaacagttt |
420 |
Q |
| |
|
|||| |||||||| | ||| ||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
8149292 |
ttttcacagctagaaatcttgcaacacaatcttcacagaaagagtgcgaacagttt |
8149347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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