View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_2 (Length: 968)
Name: NF13040_low_2
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 691; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 19 - 741
Target Start/End: Original strand, 16975004 - 16975726
Alignment:
| Q |
19 |
gaattgccattcctttcctctgtagaaactgcagacgatgatggtccatctttctcgagagaaattgcaggtagtatgtataacctcaaagaacttatga |
118 |
Q |
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| T |
16975004 |
gaattgccattcctttcctctgtagaaactgcagacgatgatggtccatctttctcgagagaaattgcaggtagtatgtataacctcaaagaacttatga |
16975103 |
T |
|
| Q |
119 |
ttgaaaactttgatgaacttgaggtactacctaatgaactcaactctcttagatccctggaaaaactatacatatcatgtcttggtaagcttgagtctat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
16975104 |
ttgaaaactttgatgaacttgaggtactacctaatgaactcaactctcttagatccctggaaaaactatacatctcatgttttggtaagcttgagtctat |
16975203 |
T |
|
| Q |
219 |
tccagaccatgcattgcatggtttgaattctcttaaagttttgagatttgcattttggaaaagcttaatatccttgccgcaaagcatgacaaacgtaact |
318 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16975204 |
tcctgaccatgcattgcatggtttgaattctcttcaagttttgagatttgcattttggaaaagcttaatatccttgccgcaaagcatgacaaacgtaact |
16975303 |
T |
|
| Q |
319 |
actcttgagaaacttcaaatcacttattgtcccaatctgattttacaacctactgtgaatatgttaacctcccttcgcaaagtgaaaatcttcagtgacg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16975304 |
actcttgagaaacttcaaatcacttattgtcccaatctgattttacaacctactatgaatatgttaacttcccttcgcaaagtgaaaatcttcagtgacg |
16975403 |
T |
|
| Q |
419 |
atatacattgtgggttaccaaatggcttagaatgtattctgtcactgcgggaactgagtcttacaaattttccttctcatgcatccttgccagaccggtt |
518 |
Q |
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| T |
16975404 |
atatacattgtgggttaccaaatggcttagaatgtattccgtcactgcgggaactgagtcttacaaattttccttctcgtgcatccttgccagaccggtt |
16975503 |
T |
|
| Q |
519 |
gaaatccttggcatctcttcagacattaaaaattagtcagtttccttctcttgcatccctgccagacttgttaagggccatgacatctcttcacacatta |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16975504 |
gaaatccttggcatctcttcagacattaaaaattagtcagtttccttctcttgcatccctgccagacttgttaagggccatgacatctcttcacacatta |
16975603 |
T |
|
| Q |
619 |
gaaatttcagattttcctgagttaacttcattaccagctcattttcaacgacacttaaacttgaagaaattgcatatttataaatgtcctgggctaatga |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16975604 |
gaaatttcagattttcctgagttaacttcattaccagctcattttcaacgacacttaaacttgaagaaattgcatatttataaatgtcctgggctaatga |
16975703 |
T |
|
| Q |
719 |
accgactcactagaagaacaggt |
741 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
16975704 |
accgactcactagaagaacaggt |
16975726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 750 - 964
Target Start/End: Original strand, 16975865 - 16976080
Alignment:
| Q |
750 |
tcattagctatatcgaggagtattaacgattaagaggaggaatctaa-atggagtttgattagctatgcgtgaagactgaagagcaagtatatgatttat |
848 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16975865 |
tcattagctatatcgaggagtattaacgattaagacgaggaatctaacatggagtttgattagctatgcgtgaagactgaagagcaagtatatgatttat |
16975964 |
T |
|
| Q |
849 |
tgcatttttgttgttcgtttcaatttagtttattagtgtgagtattttgctcttttcttattgagtgttttttcatttggttcggtttgatatatccata |
948 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16975965 |
tggatatttgttgttcgtttcaatttagtttattagtgtgagtattttgctcttttcttattgagtgttttttcatttggttcggtttgatatatccata |
16976064 |
T |
|
| Q |
949 |
ttaagagattgcattg |
964 |
Q |
| |
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|||||||||||||||| |
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| T |
16976065 |
ttaagagattgcattg |
16976080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 59 - 403
Target Start/End: Original strand, 16917055 - 16917390
Alignment:
| Q |
59 |
atggtccatctttctcgagagaaattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaact |
158 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| ||| |||||||| |||||||||||||||| |||| || || | |||||||||||||||||| |
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| T |
16917055 |
atggtgcatctttcctgagagatattgcaggtaagatgcctaacctcacagaacttatgattgaaggctttcatcaaatcacggtactacctaatgaact |
16917154 |
T |
|
| Q |
159 |
caactctcttagatccctggaaaaactatacatatcatgtcttggtaagcttgagtctattccagaccatgcattgcatggtttgaattctcttaaagtt |
258 |
Q |
| |
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|| ||||| || ||||| | ||||| ||||| |||||| |||||| |||||||| ||||| || || | || || ||||||| ||||| |
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| T |
16917155 |
cagatctctcagttccctacagaaactctacatttcatgttgtggtaatcttgagtccattcctaac-----atgtc----ttcgagttctcttcaagtt |
16917245 |
T |
|
| Q |
259 |
ttgagatttgcattttggaaaagcttaatatccttgccgcaaagcatgacaaacgtaactactcttgagaaacttcaaatcacttattgtcccaatctga |
358 |
Q |
| |
|
||| | |||||| |||| || ||||||| ||||||||| ||||| | |||| | |||||| |||| ||| ||||||||| |||||||||||| || | |
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| T |
16917246 |
ttgggctttgcactttgcaatagcttaaaatccttgccccaaagtacgacagccctaactagtcttcagagacttcaaatacattattgtcccaaactca |
16917345 |
T |
|
| Q |
359 |
ttttacaacctactgtgaatatgttaacctcccttcgcaaagtga |
403 |
Q |
| |
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|||||| | ||| | |||| |||||||| |||||||| ||||||| |
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| T |
16917346 |
ttttaccagctaatatgaacatgttaacttcccttcgtaaagtga |
16917390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 58 - 413
Target Start/End: Complemental strand, 16837080 - 16836725
Alignment:
| Q |
58 |
gatggtccatctttctcgagagaaattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaac |
157 |
Q |
| |
|
|||||| |||||||| ||| | |||||||| |||| || |||| ||| | |||||| | ||| |||| ||||||||||| |||||||||||||||||| |
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| T |
16837080 |
gatggtgcatctttcctgagggtaattgcagctagtttgaataatctcgaggaacttttcattcaaaagtttgatgaactcaaggtactacctaatgaac |
16836981 |
T |
|
| Q |
158 |
tcaactctcttagatccctggaaaaactatacatatcatgtcttggtaagcttgagtctattccagaccatgcattgcatggtttgaattctcttaaagt |
257 |
Q |
| |
|
|||||||||| || ||||| ||||||||| || |||| | | |||||||||||| | || | || | | || ||||||| ||||||| ||| |
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|
| T |
16836980 |
tcaactctctcagttccctacaaaaactattaatttcattttgtccaaagcttgagtctgtcccccagtgtgtacttcaaggtttgagttctcttcgagt |
16836881 |
T |
|
| Q |
258 |
tttgagatttgcattttggaaaagcttaatatccttgccgcaaagcatgacaaacgtaactactcttgagaaacttcaaatcacttattgtcccaatctg |
357 |
Q |
| |
|
|||| ||| | | ||| |||||||||||||||||||| ||||| | ||||||| ||||| ||| |||| ||||||||| | ||||| |||||||| |
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|
| T |
16836880 |
tttgtcttttacgtattgcaaaagcttaatatccttgccccaaagtacgacaaacctaacttgtctcgagactcttcaaatcgcctattgccccaatctc |
16836781 |
T |
|
| Q |
358 |
attttacaacctactgtgaatatgttaacctcccttcgcaaagtgaaaatcttcag |
413 |
Q |
| |
|
|||||| | ||| | |||| ||| ||| |||||||| |||||| |||| |||| |
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|
| T |
16836780 |
gttttaccagctaatatgaacatgctaagttcccttcgtgaagtgagaatcatcag |
16836725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 16842191 - 16842073
Alignment:
| Q |
58 |
gatggtccatctttctcgagagaaattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaac |
157 |
Q |
| |
|
|||||| |||||||| ||| | | |||||| ||||||| |||| ||| | |||||| | |||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
16842191 |
gatggtgcatctttcctgaggggatttgcagctagtatgaataatctcgaggaacttttcattgaaaattttgatgaactcaaggtactacctaatgaac |
16842092 |
T |
|
| Q |
158 |
tcaactctcttagatccct |
176 |
Q |
| |
|
|||||||||| || ||||| |
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|
| T |
16842091 |
tcaactctctcagttccct |
16842073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 16911866 - 16911993
Alignment:
| Q |
65 |
catctttctcgagagaaattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaactcaactc |
164 |
Q |
| |
|
|||||||| |||||| |||||||||| ||| |||||||||||||||||||||||| |||| || |||| |||||||||||||||||||| ||| |
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| T |
16911866 |
catctttcctgagagatattgcaggtaagatgcctaacctcaaagaacttatgattgacgcctttcatcaactcacggtactacctaatgaactcagctc |
16911965 |
T |
|
| Q |
165 |
tcttagatccctggaaaaactatacata |
192 |
Q |
| |
|
||| | ||||| ||| ||||||||||| |
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|
| T |
16911966 |
tctccgttccctagaagaactatacata |
16911993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 277 - 411
Target Start/End: Complemental strand, 16841972 - 16841838
Alignment:
| Q |
277 |
aaaagcttaatatccttgccgcaaagcatgacaaacgtaactactcttgagaaacttcaaatcacttattgtcccaatctgattttacaacctactgtga |
376 |
Q |
| |
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|||||||||||||||||||| ||||| | || |||| ||||| ||| |||| ||||||||| | ||||| |||||||| |||||| | ||| | ||| |
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|
| T |
16841972 |
aaaagcttaatatccttgccccaaagtacgataaacctaacttgtctcgagactcttcaaatcgcctattgccccaatctcgttttaccagctaatatga |
16841873 |
T |
|
| Q |
377 |
atatgttaacctcccttcgcaaagtgaaaatcttc |
411 |
Q |
| |
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| ||| ||| |||||||| |||||| ||||||| |
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|
| T |
16841872 |
acatgctaagttcccttcgtgaagtgagaatcttc |
16841838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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